User profiles for M. Tabaka

Marcin Tabaka

Broad Institute of MIT and Harvard
Verified email at broadinstitute.org
Cited by 4087

Cycling cancer persister cells arise from lineages with distinct programs

…, HF Cabanos, JC Hütter, B Hu, PI Thakore, M Tabaka… - Nature, 2021 - nature.com
Non-genetic mechanisms have recently emerged as important drivers of cancer therapy
failure 1 , where some cancer cells can enter a reversible drug-tolerant persister state in …

[PDF][PDF] A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia

…, KD Kokkaliaris, F Mercier, M Tabaka, M Hofree… - Cell, 2019 - cell.com
Stroma is a poorly defined non-parenchymal component of virtually every organ with key roles
in organ development, homeostasis, and repair. Studies of the bone marrow stroma have …

[HTML][HTML] The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells

M Tabaka, T Kalwarczyk, J Szymanski, S Hou… - Frontiers in …, 2014 - frontiersin.org
… viscosity that is much lower than the macroscopic viscosity η m . On the contrary, probes with
r p ≫ R h experience a viscosity equal to η m . It is noteworthy that the value of the diffusion …

TIM-3 restrains anti-tumour immunity by regulating inflammasome activation

KO Dixon, M Tabaka, MA Schramm, S Xiao, R Tang… - Nature, 2021 - nature.com
T cell immunoglobulin and mucin-containing molecule 3 (TIM-3), first identified as a molecule
expressed on interferon-γ producing T cells 1 , is emerging as an important immune-…

[PDF][PDF] Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming

G Schiebinger, J Shu, M Tabaka, B Cleary… - Cell, 2019 - cell.com
Understanding the molecular programs that guide differentiation during development is a
major challenge. Here, we introduce Waddington-OT, an approach for studying developmental …

Decoding human fetal liver haematopoiesis

…, M Tabaka, D Dionne, TL Tickle, M Slyper… - Nature, 2019 - nature.com
Definitive haematopoiesis in the fetal liver supports self-renewal and differentiation of
haematopoietic stem cells and multipotent progenitors (HSC/MPPs) but remains poorly defined in …

Motion of nanoprobes in complex liquids within the framework of the length-scale dependent viscosity model

…, A Ochab-Marcinek, J Szymanski, M Tabaka… - Advances in colloid and …, 2015 - Elsevier
This paper deals with the recent phenomenological model of the motion of nanoscopic objects
(colloidal particles, proteins, nanoparticles, molecules) in complex liquids. We analysed …

Blood and immune development in human fetal bone marrow and Down syndrome

…, M Tabaka, D Dionne, TL Tickle, M Slyper… - Nature, 2021 - nature.com
Haematopoiesis in the bone marrow (BM) maintains blood and immune cell production
throughout postnatal life. Haematopoiesis first emerges in human BM at 11–12 weeks after …

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

…, M Tabaka, O Ashenberg, Y Rosen, M Slyper… - Nature …, 2020 - nature.com
… For simplicity, let us assume that we only have one biological group with m batches, and
each batch j has n j cells. We model the log[gene expression] level of gene g at batch j’s ith cell …

Scaling form of viscosity at all length-scales in poly (ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis

…, T Kalwarczyk, E Kalwarczyk, M Tabaka… - Physical Chemistry …, 2009 - pubs.rsc.org
… New capillaries were conditioned by passing a 0.1 M NaOH solution for 20 min and then …
The overlap concentration is given by x* = M p /(4/3 πR g 3 N A ), where M p is the molar …