User profiles for M. Vilkhovoy

Michael Vilkhovoy

Cornell University
Verified email at cornell.edu
Cited by 231

[HTML][HTML] The evolution of cell free biomanufacturing

M Vilkhovoy, A Adhikari, S Vadhin, JD Varner - Processes, 2020 - mdpi.com
… On the other hand, to circumvent computationally expensive parameter estimation, Vilkhovoy
and coworkers [154] developed an experimentally-validated constraint-based model of …

Engineering orthogonal human O-linked glycoprotein biosynthesis in bacteria

…, EC Cox, O Young, A Shajahan, M Vilkhovoy… - Nature chemical …, 2020 - nature.com
A major objective of synthetic glycobiology is to re-engineer existing cellular glycosylation
pathways from the top down or construct non-natural ones from the bottom up for new and …

Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

M Vilkhovoy, N Horvath, CH Shih… - ACS synthetic …, 2018 - ACS Publications
Cell-free protein synthesis (CFPS) is a widely used research tool in systems and synthetic
biology. However, if CFPS is to become a mainstream technology for applications such as …

[HTML][HTML] Toward a genome scale sequence specific dynamic model of cell-free protein synthesis in Escherichia coli

N Horvath, M Vilkhovoy, JA Wayman, K Calhoun… - Metabolic engineering …, 2020 - Elsevier
In this study, we developed a dynamic mathematical model of E. coli cell-free protein synthesis
(CFPS). Model parameters were estimated from a dataset consisting of glucose, organic …

Convergent approaches to delineate the metabolic regulation of tumor invasion by hyaluronic acid biosynthesis

AA Shimpi, ML Tan, M Vilkhovoy, D Dai… - Advanced …, 2023 - Wiley Online Library
Metastasis is the leading cause of breast cancer‐related deaths and is often driven by
invasion and cancer‐stem like cells (CSCs). Both the CSC phenotype and invasion are …

Absolute quantification of cell-free protein synthesis metabolism by reversed-phase liquid chromatography-mass spectrometry

M Vilkhovoy, D Dai, S Vadhin, A Adhikari… - JoVE (Journal of …, 2019 - jove.com
Cell-free protein synthesis (CFPS) is an emerging technology in systems and synthetic
biology for the in vitro production of proteins. However, if CFPS is going to move beyond the …

[HTML][HTML] JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language

DM Bassen, M Vilkhovoy, M Minot, JT Butcher… - BMC systems …, 2017 - Springer
Background Ensemble modeling is a promising approach for obtaining robust predictions
and coarse grained population behavior in deterministic mathematical models. Ensemble …

Effective dynamic models of metabolic networks

M Vilkhovoy, M Minot, JD Varner - IEEE Life Sciences Letters, 2016 - ieeexplore.ieee.org
Mathematical models of biochemical networks are the useful tools to understand and ultimately
predict how cells utilize nutrients to produce valuable products. Hybrid cybernetic models …

[HTML][HTML] Effective biophysical modeling of cell free transcription and translation processes

A Adhikari, M Vilkhovoy, S Vadhin, HE Lim… - … in bioengineering and …, 2020 - frontiersin.org
Transcription and translation are at the heart of metabolism and signal transduction. In this
study, we developed an effective biophysical modeling approach to simulate transcription and …

Modeling glucose and subcutaneous insulin dynamics in critical care

…, G Clermont, TD Knab, J Maalouf, M Vilkhovoy… - Control Engineering …, 2017 - Elsevier
Abstract Model-based decision support could be used to tailor insulin treatment to patients
suffering from stress hyperglycemia, while avoiding hypoglycemia. This work combines a …