A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

…, GJ Muehlbauer, N Stein, H Gundlach, M Zytnicki… - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

[HTML][HTML] Long noncoding RNAs with enhancer-like function in human cells

…, K Gumireddy, A Gardini, G Bussotti, F Lai, M Zytnicki… - Cell, 2010 - cell.com
While the long noncoding RNAs (ncRNAs) constitute a large portion of the mammalian
transcriptome, their biological functions has remained elusive. A few long ncRNAs that have been …

Ancient hybridizations among the ancestral genomes of bread wheat

…, GJ Muehlbauer, N Stein, H Gundlach, M Zytnicki… - science, 2014 - science.org
The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B,
and D), but a clear understanding of their phylogenetic history has been lacking. We used …

Identification of a novel micro RNA (mi RNA) from rice that targets an alternatively spliced transcript of the N ramp6 (N atural resistance‐associated macrophage …

…, C Siré, AB Moreno, L Donaire, M Zytnicki… - New …, 2013 - Wiley Online Library
… This work investigates miRNAs that are regulated by elicitors from the blast fungus M … novel
regulatory network that integrates mi RNA function and m RNA processing in plant immunity. …

Soft arc consistency revisited

…, S De Givry, M Sánchez, T Schiex, M Zytnicki… - Artificial Intelligence, 2010 - Elsevier
… ,⩾〉 where Qm is the set of rational numbers α satisfying 0 ⩽ α < m. For clarity of
presentation, we use ∞ as a synonym of m in Qm, since this valuation represents complete …

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

…, N Warthmann, C Chica, B Szarzynska, M Zytnicki… - Nature plants, 2015 - nature.com
Despite evolutionary conserved mechanisms to silence transposable element activity, there
are drastic differences in the abundance of transposable elements even among closely …

[PDF][PDF] Existential arc consistency: Getting closer to full arc consistency in weighted CSPs

S De Givry, F Heras, M Zytnicki, J Larrosa - IJCAI, 2005 - ijcai.org
zytnicki@toulouse.inra.fr INRA … The M* instances are very challenging for mathematical
programming approaches because they have a large number of suboptimal solutions. …

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

…, A Eymery, M Coiffet, M Zytnicki… - Proceedings of the …, 2013 - National Acad Sciences
Most of our understanding of Drosophila heterochromatin structure and evolution has come
from the annotation of heterochromatin from the isogenic y; cn bw sp strain. However, almost …

[HTML][HTML] Multi-species annotation of transcriptome and chromatin structure in domesticated animals

…, N Vialaneix, A Rau, K Muret, D Esquerré, M Zytnicki… - BMC biology, 2019 - Springer
… Cells were then fixed with 1% formaldehyde for 10 min at 37 ∘ C and fixation was stopped
by adding Glycine to a final concentration of 0.125M. After two washes with PBS, cells were …

Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis

S Schbath, V Martin, M Zytnicki, J Fayolle… - Journal of …, 2012 - liebertpub.com
… Goodson M.Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence
reads… Koyutrk M.Comparative analysis of algorithms for next-generation sequencing read …