Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data

TH Webster, M Couse, BM Grande, E Karlins… - …, 2019 - academic.oup.com
Background Mammalian X and Y chromosomes share a common evolutionary origin and
retain regions of high sequence similarity. Similar sequence content can confound the …

Bridging clinical care and research in Ontario, Canada: Maximizing diagnoses from reanalysis of clinical exome sequencing data

…, É Soubry, M Acker, M Osmond, M Couse… - Clinical …, 2023 - Wiley Online Library
We examined the utility of clinical and research processes in the reanalysis of publicly‐funded
clinical exome sequencing data in Ontario, Canada. In partnership with eight sites, we …

Genomics4RD: An integrated platform to share Canadian deep‐phenotype and multiomic data for international rare disease gene discovery

…, AK Ramani, E Kirby, KD Kernohan, M Couse… - Human …, 2022 - Wiley Online Library
Despite recent progress in the understanding of the genetic etiologies of rare diseases (RDs),
a significant number remain intractable to diagnostic and discovery efforts. Broad data …

KDM5A mutations identified in autism spectrum disorder using forward genetics

…, BR DuPont, RJ Louie, CAUSES Study, M Couse… - Elife, 2020 - elifesciences.org
Autism spectrum disorder (ASD) is a constellation of neurodevelopmental disorders with
high phenotypic and genetic heterogeneity, complicating the discovery of causative genes. …

[PDF][PDF] Genome-wide sequencing and the clinical diagnosis of genetic disease: The CAUSES study

…, L Brown, C Chijiwa, L Clarke, M Couse… - Human Genetics and …, 2022 - cell.com
Genome-wide sequencing (GWS) is a standard of care for diagnosis of suspected genetic
disorders, but the proportion of patients found to have pathogenic or likely pathogenic variants …

Aspartylglycosamine is a biomarker for NGLY1-CDDG, a congenital disorder of deglycosylation

…, M van der Ham, J Gerrits, MH Couse… - Molecular Genetics and …, 2019 - Elsevier
Background NGLY1-CDDG is a congenital disorder of deglycosylation caused by a defective
peptide:N-glycanase (PNG). To date, all but one of the reported patients have been …

Integrated omics analyses clarifies ATRX copy number variant of uncertain significance

AE Marshall, Y Liang, M Couse, H McConkey… - Journal of Human …, 2024 - nature.com
Partial duplications of genes can be challenging to detect and interpret and, therefore, likely
represent an underreported cause of human disease. X-linked dominant variants in ATRX …

[HTML][HTML] Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability

…, HJE Chun, EL Lim, CDM Van Karnebeek, M Couse… - BMC genomics, 2017 - Springer
Background Intellectual Disability (ID) is among the most common global disorders, yet etiology
is unknown in ~30% of patients despite clinical assessment. Whole genome sequencing …

Biological and nutrient responses to catchment disturbance and warming in small lakes near the Alaskan tundra–taiga boundary

AS Medeiros, DJ Taylor, M Couse, RI Hall… - The …, 2014 - journals.sagepub.com
Understanding effects of recent climate warming and changes in catchment conditions on
nutrient cycling and the biology of shallow subarctic lakes is necessary to predict their …

A common flanking variant is associated with enhanced meiotic stability of the FGF14-SCA27B locus

D Pellerin, GD Gobbo, M Couse, E Dolzhenko… - Biorxiv, 2023 - biorxiv.org
The factors driving initiation of pathological expansion of tandem repeats remain largely
unknown. Here, we assessed the FGF14-SCA27B (GAA)•(TTC) repeat locus in 2,530 …