User profiles for Maga Rowicka
 | Maga RowickaAssociate Professor, University of Texas Medical Branch at Galveston Verified email at utmb.edu Cited by 3223 |
Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes
BP Tu, A Kudlicki, M Rowicka, SL McKnight - Science, 2005 - science.org
Budding yeast grown under continuous, nutrient-limited conditions exhibit robust, highly
periodic cycles in the form of respiratory bursts. Microarray studies reveal that over half of the …
periodic cycles in the form of respiratory bursts. Microarray studies reveal that over half of the …
Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing
We present a genome-wide approach to map DNA double-strand breaks (DSBs) at nucleotide
resolution by a method we termed BLESS (direct in situ breaks labeling, enrichment on …
resolution by a method we termed BLESS (direct in situ breaks labeling, enrichment on …
[PDF][PDF] Comprehensive mapping of histone modifications at DNA double-strand breaks deciphers repair pathway chromatin signatures
Double-strand breaks (DSBs) are extremely detrimental DNA lesions that can lead to cancer-driving
mutations and translocations. Non-homologous end joining (NHEJ) and …
mutations and translocations. Non-homologous end joining (NHEJ) and …
Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes
…, M Skrzypczak, K Ginalski, M Rowicka… - Nature structural & …, 2017 - nature.com
The ability of DNA double-strand breaks (DSBs) to cluster in mammalian cells has been a
subject of intense debate in recent years. Here we used a high-throughput chromosome …
subject of intense debate in recent years. Here we used a high-throughput chromosome …
[HTML][HTML] Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
…, A Sarrazin, C Mettling, M Rowicka… - Nature …, 2020 - nature.com
R-loops have both positive and negative impacts on chromosome functions. To identify toxic
R-loops in the human genome, here, we map RNA:DNA hybrids, replication stress markers …
R-loops in the human genome, here, we map RNA:DNA hybrids, replication stress markers …
Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of N-end rule and ubiquitin-fusion degradation pathway …
Valosin-containing protein (VCP; p97; cdc48 in yeast) is a hexameric ATPase of the AAA family
(ATPases with multiple cellular activities) involved in multiple cellular functions, including …
(ATPases with multiple cellular activities) involved in multiple cellular functions, including …
[HTML][HTML] Strategies for achieving high sequencing accuracy for low diversity samples and avoiding sample bleeding using illumina platform
Sequencing microRNA, reduced representation sequencing, Hi-C technology and any
method requiring the use of in-house barcodes result in sequencing libraries with low initial …
method requiring the use of in-house barcodes result in sequencing libraries with low initial …
[HTML][HTML] Comprehensive Structural and Substrate Specificity Classification of the Saccharomyces cerevisiae Methyltransferome
Methylation is one of the most common chemical modifications of biologically active
molecules and it occurs in all life forms. Its functional role is very diverse and involves many …
molecules and it occurs in all life forms. Its functional role is very diverse and involves many …
High-resolution timing of cell cycle-regulated gene expression
M Rowicka, A Kudlicki, BP Tu… - Proceedings of the …, 2007 - National Acad Sciences
The eukaryotic cell division cycle depends on an intricate sequence of transcriptional events.
Using an algorithm based on maximum-entropy deconvolution, and expression data from a …
Using an algorithm based on maximum-entropy deconvolution, and expression data from a …
[HTML][HTML] qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing
DNA double-strand breaks (DSBs) are among the most lethal types of DNA damage and
frequently cause genome instability. Sequencing-based methods for mapping DSBs have been …
frequently cause genome instability. Sequencing-based methods for mapping DSBs have been …