User profiles for Makoto K. Shimada

Makoto K. Shimada

Fujita Health University
Verified email at fujita-hu.ac.jp
Cited by 662

Allele frequency distribution of the canine dopamine receptor D4 gene exon III and I in 23 breeds

…, H Nara, M Inoue-Murayama, MK Shimada… - Journal of Veterinary …, 2004 - jstage.jst.go.jp
Various canine breeds are remarkably different from each other not only in their sizes and
shapes but also in behavioral traits, suggesting that some of them are under genetic control. …

A modification of the PHYLIP program: a solution for the redundant cluster problem, and an implementation of an automatic bootstrapping on trees inferred from …

MK Shimada, T Nishida - Molecular phylogenetics and evolution, 2017 - Elsevier
Felsenstein’s PHYLIP package of molecular phylogeny tools has been used globally since
1980. The programs are receiving renewed attention because of their character-based user …

[HTML][HTML] Distribution and effects of nonsense polymorphisms in human genes

Y Yamaguchi-Kabata, MK Shimada, Y Hayakawa… - PloS one, 2008 - journals.plos.org
Background A great amount of data has been accumulated on genetic variations in the
human genome, but we still do not know much about how the genetic variations affect gene …

Mechanistic insights into human pre-mRNA splicing of human ultra-short introns: potential unusual mechanism identifies G-rich introns

N Sasaki-Haraguchi, MK Shimada, I Taniguchi… - Biochemical and …, 2012 - Elsevier
It is unknown how very short introns (<65 nt; termed ‘ultra-short’ introns) could be spliced in
a massive spliceosome (>2.7MDa) without steric hindrance. By screening an annotated …

High prevalence of simian T-lymphotropic virus type L in wild Ethiopian baboons

T Takemura, M Yamashita, MK Shimada… - Journal of …, 2002 - Am Soc Microbiol
Simian T-cell leukemia viruses (STLVs) are the simian counterparts of human T-cell leukemia
viruses (HTLVs). A novel, divergent type of STLV (STLV-L) from captive baboons was …

Divergent haplotypes and human history as revealed in a worldwide survey of X-linked DNA sequence variation

MK Shimada, K Panchapakesan… - Molecular biology …, 2007 - academic.oup.com
The population genetic history of a 10.1-kbp noncoding region of the human X chromosome
was studied using the males of the HGDP-CEPH Human Genome Diversity Panel (672 …

[HTML][HTML] Identification and validation of evolutionarily conserved unusually short pre-mRNA introns in the human genome

MK Shimada, N Sasaki-Haraguchi… - International journal of …, 2015 - mdpi.com
Shimada and Akila Mayeda conceived and designed the studies; Makoto K. Shimada
performed the database search and bioinformatic analysis; Noriko Sasaki-Haraguchi performed …

Mitochondrial DNA genealogy of chimpanzees in the Nimba Mountains and Bossou, West Africa

MK Shimada, S Hayakawa, T Humle… - American Journal of …, 2004 - Wiley Online Library
The chimpanzee populations of the Bossou and Nimba regions in West Africa were
genetically surveyed to 1) reveal the genetic relationship between the Bossou and Nimba …

[PDF][PDF] < Note> A Survey of the Nimba Mountains, West Africa from Three Routes: Confirmed New Habitat and Ant-Catching Wand Use of Chimpanzees

MK Shimada - Pan Africa News, 2000 - repository.kulib.kyoto-u.ac.jp
Shimada, Makoto K. Shimada, Makoto K.. <Note> A Survey of the Nimba Mountains,
West Africa from Three Routes: Confirmed New Habitat and Ant-Catching Wand Use of …

VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts

MK Shimada, R Matsumoto, Y Hayakawa… - Nucleic acids …, 2009 - academic.oup.com
Creation of a vast variety of proteins is accomplished by genetic variation and a variety of
alternative splicing transcripts. Currently, however, the abundant available data on genetic …