User profiles for Manuel A. Rivas

Manuel A. Rivas

Assistant Professor, Department of Biomedical Data Science, Stanford University
Verified email at stanford.edu
Cited by 60586

A framework for variation discovery and genotyping using next-generation DNA sequencing data

…, C Hartl, AA Philippakis, G Del Angel, MA Rivas… - Nature …, 2011 - nature.com
Recent advances in sequencing technology make it possible to comprehensively catalog
genetic variation in population samples, creating a foundation for understanding human …

[HTML][HTML] Analysis of protein-coding genetic variation in 60,706 humans

…, L Orozco, GM Peloso, R Poplin, MA Rivas… - Nature, 2016 - nature.com
Large-scale reference data sets of human genetic variation are critical for the medical and
functional interpretation of DNA sequence changes. Here we describe the aggregation and …

The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

…, T Lappalainen, PG Ferreira, H Ongen, MA Rivas… - Science, 2015 - science.org
Understanding the functional consequences of genetic variation, and how it affects complex
human disease and quantitative traits, remains a critical challenge for biomedicine. We …

A cross-population atlas of genetic associations for 220 human phenotypes

…, K Yamamoto, Y Kamatani, A Palotie, MA Rivas… - Nature …, 2021 - nature.com
Current genome-wide association studies do not yet capture sufficient diversity in
populations and scope of phenotypes. To expand an atlas of genetic associations in non-European …

Transcriptome and genome sequencing uncovers functional variation in humans

…, MR Friedländer, PAC 't Hoen, J Monlong, MA Rivas… - Nature, 2013 - nature.com
Genome sequencing projects are discovering millions of genetic variants in humans, and
interpretation of their functional effects is essential for understanding the genetic basis of …

The genetic architecture of type 2 diabetes

…, P Fontanillas, L Moutsianas, DJ McCarthy, MA Rivas… - Nature, 2016 - nature.com
The genetic architecture of common traits, including the number, frequency, and effect sizes
of inherited variants that contribute to individual risk, has been long debated. Genome-wide …

[HTML][HTML] Testing for an unusual distribution of rare variants

BM Neale, MA Rivas, BF Voight, D Altshuler… - PLoS …, 2011 - journals.plos.org
Technological advances make it possible to use high-throughput sequencing as a primary
discovery tool of medical genetics, specifically for assaying rare variation. Still this approach …

Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease

MA Rivas, M Beaudoin, A Gardet, C Stevens… - Nature …, 2011 - nature.com
More than 1,000 susceptibility loci have been identified through genome-wide association
studies (GWAS) of common variants; however, the specific genes and full allelic spectrum of …

[HTML][HTML] Landscape of X chromosome inactivation across human tissues

T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall… - Nature, 2017 - nature.com
X chromosome inactivation (XCI) silences transcription from one of the two X chromosomes
in female mammalian cells to balance expression dosage between XX females and XY …

Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction

…, A Hamsten, R Clarke, DF Reilly, W Yin, MA Rivas… - Nature, 2015 - nature.com
Myocardial infarction (MI), a leading cause of death around the world, displays a complex
pattern of inheritance 1 , 2 . When MI occurs early in life, genetic inheritance is a major …