A number of approaches for studying macroevolution using phylogenetic trees have been
developed in the last few years. Here, we present RPANDA , an R package that implements …

Many classical ecological and evolutionary theoretical frameworks posit that competition
between species is an important selective force. For example, in adaptive radiations, resource …

… Author links open overlay panel Chaoran Chen a b , Sarah Ann Nadeau a b 1 , Ivan Topolsky
a b 1 , Marc Manceau a b 1 , Jana S. Huisman a b c 1 , Kim Philipp Jablonski a b , Lara …

Abstract Models of phenotypic evolution fit to phylogenetic comparative data are widely
used to make inferences regarding the tempo and mode of trait evolution. A wide range of …

There is a long tradition in ecology of studying models of biodiversity at equilibrium. These
models, including the influential Neutral Theory of Biodiversity, have been successful at …

Phylodynamic models generally aim at jointly inferring phylogenetic relationships, model
parameters, and more recently, the number of lineages through time, based on molecular …

Importance The DRAMES (Décès en Relation avec l’Abus de Médicaments Et de Substances)
register is a database of drug-related deaths with the aim of identifying the psychoactive …

We consider a homogeneous birth-death process with three different sampling schemes.
First, individuals can be sampled through time and included in a reconstructed phylogenetic …

We study the problem of computing the probability distribution of phylogenetic trees that
commonly arise in areas ranging from epidemiology to macroevolution. We focus on …

In standard models of molecular evolution, DNA sequences evolve through asynchronous
substitutions according to Poisson processes with a constant rate (called the molecular clock) …