User profiles for Marek Kimmel

Marek Kimmel

Professor of Statistics and Bioengineering, Rice University
Verified email at rice.edu
Cited by 14063

Mathematical model of NF-κB regulatory module

…, P Paszek, AR Brasier, B Luxon, M Kimmel - Journal of theoretical …, 2004 - Elsevier
The two-feedback-loop regulatory module of nuclear factor κB (NF-κB) signaling pathway is
modeled by means of ordinary differential equations. The constructed model involves two-…

Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci

R Chakraborty, M Kimmel, DN Stivers… - Proceedings of the …, 1997 - National Acad Sciences
Using the generalized stepwise mutation model, we propose a method of estimating the relative
mutation rates of microsatellite loci, grouped by the repeat motif. Applying ANOVA to the …

[PDF][PDF] Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images

PA Penczek, M Kimmel, CMT Spahn - Structure, 2011 - cell.com
We present the codimensional principal component analysis (PCA), a novel and straightforward
method for resolving sample heterogeneity within a set of cryo-EM 2D projection images …

An accurate, sensitive, and scalable method to identify functional sites in protein structures

…, I Mihalek, ME Sowa, C Shaw, M Kimmel… - Journal of molecular …, 2003 - Elsevier
Functional sites determine the activity and interactions of proteins and as such constitute the
targets of most drugs. However, the exponential growth of sequence and structure data far …

The sensitivity of bladder wash flow cytometry, bladder wash cytology, and voided cytology in the detection of bladder carcinoma

RA Badalament, DK Hermansen, M Kimmel, H Gay… - Cancer, 1987 - Wiley Online Library
The sensitivity of voided urinary cytology (VUC), bladder wash cytology (BWC), and bladder
wash flow cytometry (BWFCM) in detecting cancer was studied in 70 patients with biopsy‐…

[HTML][HTML] Microarray experiments and factors which affect their reliability

…, M Iwanaszko, J Rzeszowska-Wolny, M Kimmel - Biology direct, 2015 - Springer
Oligonucleotide microarrays belong to the basic tools of molecular biology and allow for
simultaneous assessment of the expression level of thousands of genes. Analysis of microarray …

Alveolar soft‐part sarcoma. A clinico‐pathologic study of half a century

PH Lieberman, MF Brennan, M Kimmel… - Cancer, 1989 - Wiley Online Library
In the period from 1923 to 1986 our pathologists examined pathologic material from 102
patients with alveolar soft‐part sarcoma (ASPS). Followup clinical data is available for 91. …

Stability analysis of models of cell production systems

O Arino, M Kimmel - Mathematical Modelling, 1986 - Elsevier
We investigate the qualitative behaviour of the models of cell production systems, in the form
of systems of nonlinear delay differential equations. Considered are three general models …

[PDF][PDF] Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling

…, X Long, P Kus, R Jaksik, GA Challen, M Kimmel… - Cell stem cell, 2021 - cell.com
Age-related clonal hematopoiesis (CH) is a risk factor for malignancy, cardiovascular disease,
and all-cause mortality. Somatic mutations in DNMT3A are drivers of CH, but decades …

The effect of surgical treatment on survival from early lung cancer: implications for screening

BJ Flehinger, M Kimmel, MR Melamed - Chest, 1992 - Elsevier
We assessed the effect of surgery on survival from stage I non-small-cell lung cancer based
on data collected in these screening programs. The majority of patients diagnosed in each …