User profiles for Margot Sunshine
Margot SunshineSystems Analyst Verified email at mail.nih.gov Cited by 4403 |
The BioPAX community standard for pathway data sharing
…, D Ravenscroft, L Ren, N Shah, M Sunshine… - Nature …, 2010 - nature.com
Biological Pathway Exchange (BioPAX) is a standard language to represent biological
pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The …
pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The …
[HTML][HTML] GoMiner: a resource for biological interpretation of genomic and proteomic data
We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for
example, under- and overexpressed genes from a microarray experiment) for biological …
example, under- and overexpressed genes from a microarray experiment) for biological …
Using CellMiner 1.6 for systems pharmacology and genomic analysis of the NCI-60
The NCI-60 cancer cell line panel provides a premier model for data integration, and systems
pharmacology being the largest publicly available database of anticancer drug activity, …
pharmacology being the largest publicly available database of anticancer drug activity, …
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
High-throughput and high-content databases are increasingly important resources in molecular
medicine, systems biology, and pharmacology. However, the information usually resides …
medicine, systems biology, and pharmacology. However, the information usually resides …
[HTML][HTML] CellMiner: a relational database and query tool for the NCI-60 cancer cell lines
UT Shankavaram, S Varma, D Kane, M Sunshine… - BMC genomics, 2009 - Springer
Background Advances in the high-throughput omic technologies have made it possible to
profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional, and …
profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional, and …
[HTML][HTML] High-Throughput GoMiner, an'industrial-strength'integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies …
BR Zeeberg, H Qin, S Narasimhan, M Sunshine… - BMC …, 2005 - Springer
Background We previously developed GoMiner, an application that organizes lists of 'interesting'
genes (for example, under-and overexpressed genes from a microarray experiment) for …
genes (for example, under-and overexpressed genes from a microarray experiment) for …
[PDF][PDF] CellMinerCDB for integrative cross-database genomics and pharmacogenomics analyses of cancer cell lines
CellMinerCDB provides a web-based resource (https://discover.nci.nih.gov/cellminercdb/)
for integrating multiple forms of pharmacological and genomic analyses, and unifying the …
for integrating multiple forms of pharmacological and genomic analyses, and unifying the …
RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDB
The current study provides RNA sequencing data for the NCI-60 cell lines made accessible
through both CellMiner and CellMinerCDB and is an important pharmacogenomics resource …
through both CellMiner and CellMinerCDB and is an important pharmacogenomics resource …
[HTML][HTML] MatchMiner: a tool for batch navigation among gene and gene product identifiers
KJ Bussey, D Kane, M Sunshine, S Narasimhan… - Genome biology, 2003 - Springer
MatchMiner is a freely available program package for batch navigation among gene and
gene product identifier types commonly encountered in microarray studies and other forms of '…
gene product identifier types commonly encountered in microarray studies and other forms of '…
The NCI-60 methylome and its integration into CellMiner
A unique resource for systems pharmacology and genomic studies is the NCI-60 cancer cell
line panel, which provides data for the largest publicly available library of compounds with …
line panel, which provides data for the largest publicly available library of compounds with …