User profiles for Margot Sunshine

Margot Sunshine

Systems Analyst
Verified email at mail.nih.gov
Cited by 4403

The BioPAX community standard for pathway data sharing

…, D Ravenscroft, L Ren, N Shah, M Sunshine… - Nature …, 2010 - nature.com
Biological Pathway Exchange (BioPAX) is a standard language to represent biological
pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The …

[HTML][HTML] GoMiner: a resource for biological interpretation of genomic and proteomic data

…, W Feng, G Wang, MD Wang, AT Fojo, M Sunshine… - Genome biology, 2003 - Springer
We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for
example, under- and overexpressed genes from a microarray experiment) for biological …

Using CellMiner 1.6 for systems pharmacology and genomic analysis of the NCI-60

WC Reinhold, M Sunshine, S Varma, JH Doroshow… - Clinical Cancer …, 2015 - AACR
The NCI-60 cancer cell line panel provides a premier model for data integration, and systems
pharmacology being the largest publicly available database of anticancer drug activity, …

CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set

WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn… - Cancer research, 2012 - AACR
High-throughput and high-content databases are increasingly important resources in molecular
medicine, systems biology, and pharmacology. However, the information usually resides …

[HTML][HTML] CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

UT Shankavaram, S Varma, D Kane, M Sunshine… - BMC genomics, 2009 - Springer
Background Advances in the high-throughput omic technologies have made it possible to
profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional, and …

[HTML][HTML] High-Throughput GoMiner, an'industrial-strength'integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies …

BR Zeeberg, H Qin, S Narasimhan, M Sunshine… - BMC …, 2005 - Springer
Background We previously developed GoMiner, an application that organizes lists of 'interesting'
genes (for example, under-and overexpressed genes from a microarray experiment) for …

[PDF][PDF] CellMinerCDB for integrative cross-database genomics and pharmacogenomics analyses of cancer cell lines

…, A Luna, M Yamade, L Loman, S Varma, M Sunshine… - Iscience, 2018 - cell.com
CellMinerCDB provides a web-based resource (https://discover.nci.nih.gov/cellminercdb/)
for integrating multiple forms of pharmacological and genomic analyses, and unifying the …

RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDB

WC Reinhold, S Varma, M Sunshine, F Elloumi… - Cancer research, 2019 - AACR
The current study provides RNA sequencing data for the NCI-60 cell lines made accessible
through both CellMiner and CellMinerCDB and is an important pharmacogenomics resource …

[HTML][HTML] MatchMiner: a tool for batch navigation among gene and gene product identifiers

KJ Bussey, D Kane, M Sunshine, S Narasimhan… - Genome biology, 2003 - Springer
MatchMiner is a freely available program package for batch navigation among gene and
gene product identifier types commonly encountered in microarray studies and other forms of '…

The NCI-60 methylome and its integration into CellMiner

WC Reinhold, S Varma, M Sunshine, V Rajapakse… - Cancer research, 2017 - AACR
A unique resource for systems pharmacology and genomic studies is the NCI-60 cancer cell
line panel, which provides data for the largest publicly available library of compounds with …