User profiles for Maria Masid

Maria Masid

Ludwig Institute for Cancer Research, Lausanne University Hospital (CHUV), University of …
Verified email at unil.ch
Cited by 193

[HTML][HTML] Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN

M Masid, M Ataman, V Hatzimanikatis - Nature communications, 2020 - nature.com
Altered metabolism is associated with many human diseases. Human genome-scale
metabolic models (GEMs) were reconstructed within systems biology to study the biochemistry …

[HTML][HTML] A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics

O Oftadeh, P Salvy, M Masid, M Curvat… - Nature …, 2021 - nature.com
Eukaryotic organisms play an important role in industrial biotechnology, from the production
of fuels and commodity chemicals to therapeutic proteins. To optimize these industrial …

[HTML][HTML] Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression

…, SH Rossi, C Massie, C Lohoff, M Masid… - Nature …, 2022 - nature.com
Metabolic reprogramming is critical for tumor initiation and progression. However, the exact
impact of specific metabolic changes on cancer progression is poorly understood. Here, we …

[PDF][PDF] NUMERICAL ANALYSIS OF A THERMOELASTIC DIFFUSION PROBLEM WITH VOIDS.

JR Fernandez, M Masid - International Journal of Numerical …, 2017 - math.ualberta.ca
In this paper we consider, from the numerical point of view, a thermoelastic diffusion porous
problem. This is written as a coupled system of two hyperbolic equations, for the …

Numerical analysis of an osteoconduction model arising in bone‐implant integration

…, JM García‐Aznar, M Masid - ZAMM‐Journal of …, 2017 - Wiley Online Library
In this paper, we study, from a numerical point of view, an osseointegrated model depending
on the density of the osteogenic cells and osteoblasts and one generic growth factor. The …

[HTML][HTML] Rational strain design with minimal phenotype perturbation

B Narayanan, D Weilandt, M Masid, L Miskovic… - Nature …, 2024 - nature.com
Devising genetic interventions for desired cellular phenotypes remains challenging regarding
time and resources. Kinetic models can accelerate this task by simulating metabolic …

Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models

DR Weilandt, P Salvy, M Masid, G Fengos… - …, 2023 - academic.oup.com
Motivation Large-scale kinetic models are an invaluable tool to understand the dynamic and
adaptive responses of biological systems. The development and application of these …

[HTML][HTML] Analysis for the strain gradient theory of porous thermoelasticity

JR Fernández, A Magaña, M Masid… - Journal of Computational …, 2019 - Elsevier
In this paper, we analyse a model involving a strain gradient thermoelastic rod with voids.
Existence and uniqueness, as well as an energy decay property, are proved by means of the …

On the viscoelastic mixtures of solids

JR Fernández, A Magaña, M Masid… - Applied Mathematics & …, 2019 - Springer
In this paper we analyze an homogeneous and isotropic mixture of viscoelastic solids. We
propose conditions to guarantee the coercivity of the internal energy and also of the …

A porous thermoelastic problem: an a priori error analysis and computational experiments

JR Fernández, M Masid - Applied Mathematics and Computation, 2017 - Elsevier
In this paper, a porous thermoelastic problem is numerically considered. The variational
formulation is written as a coupled system of two hyperbolic equations for the displacement and …