[HTML][HTML] The Genome of the Netherlands: design, and project goals

…, A Abdellaoui, K Ye, V Guryev, M Vermaat… - European journal of …, 2014 - nature.com
Within the Netherlands a national network of biobanks has been established (Biobanking and
Biomolecular Research Infrastructure-Netherlands (BBMRI-NL)) as a national node of the …

Disease variants alter transcription factor levels and methylation of their binding sites

…, DV Zhernakova, M Moed, P Deelen, M Vermaat… - Nature …, 2017 - nature.com
Most disease-associated genetic variants are noncoding, making it challenging to design
experiments to understand their functional consequences 1 , 2 . Identification of expression …

Identification of context-dependent expression quantitative trait loci in whole blood

DV Zhernakova, P Deelen, M Vermaat, M Van Iterson… - Nature …, 2017 - nature.com
Genetic risk factors often localize to noncoding regions of the genome with unknown effects
on disease etiology 1 , 2 . Expression quantitative trait loci (eQTLs) help to explain the …

[PDF][PDF] DNA methylation analysis identifies loci for blood pressure regulation

…, P Deelen, I Nooren, M Moed, M Vermaat… - The American Journal of …, 2017 - cell.com
Genome-wide association studies have identified hundreds of genetic variants associated
with blood pressure (BP), but sequence variation accounts for a small fraction of the …

[PDF][PDF] Improving phenotypic prediction by combining genetic and epigenetic associations

…, P Deelen, I Nooren, M Moed, M Vermaat… - The American Journal of …, 2015 - cell.com
We tested whether DNA-methylation profiles account for inter-individual variation in body
mass index (BMI) and height and whether they predict these phenotypes over and above …

[HTML][HTML] Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing

…, E Tseng, GM Sheynkman, E de Klerk, M Vermaat… - Genome biology, 2018 - Springer
Background The multifaceted control of gene expression requires tight coordination of
regulatory mechanisms at transcriptional and post-transcriptional level. Here, we studied the …

[HTML][HTML] Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects

…, M Van Tienhoven, M Vermaat… - European Journal of …, 2015 - nature.com
Implementation of next-generation DNA sequencing (NGS) technology into routine
diagnostic genome care requires strategic choices. Instead of theoretical discussions on the …

[HTML][HTML] Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs

…, J Bot, P van't Hof, I Nooren, M Moed, M Vermaat… - Journal of …, 2016 - Elsevier
Genome-wide association and fine-mapping studies in 14 autoimmune diseases (AID) have
implicated more than 250 loci in one or more of these diseases. As more than 90% of AID-…

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck

M Li, R Rothwell, M Vermaat, M Wachsmuth… - Genome …, 2016 - genome.cshlp.org
Although previous studies have documented a bottleneck in the transmission of mtDNA
genomes from mothers to offspring, several aspects remain unclear, including the size and …

Mutalyzer 2: next generation HGVS nomenclature checker

M Lefter, JK Vis, M Vermaat, JT den Dunnen… - …, 2021 - academic.oup.com
Motivation Unambiguous variant descriptions are of utmost importance in clinical genetic
diagnostics, scientific literature and genetic databases. The Human Genome Variation Society (…