[HTML][HTML] The Genome of the Netherlands: design, and project goals
Within the Netherlands a national network of biobanks has been established (Biobanking and
Biomolecular Research Infrastructure-Netherlands (BBMRI-NL)) as a national node of the …
Biomolecular Research Infrastructure-Netherlands (BBMRI-NL)) as a national node of the …
Disease variants alter transcription factor levels and methylation of their binding sites
…, DV Zhernakova, M Moed, P Deelen, M Vermaat… - Nature …, 2017 - nature.com
Most disease-associated genetic variants are noncoding, making it challenging to design
experiments to understand their functional consequences 1 , 2 . Identification of expression …
experiments to understand their functional consequences 1 , 2 . Identification of expression …
Identification of context-dependent expression quantitative trait loci in whole blood
Genetic risk factors often localize to noncoding regions of the genome with unknown effects
on disease etiology 1 , 2 . Expression quantitative trait loci (eQTLs) help to explain the …
on disease etiology 1 , 2 . Expression quantitative trait loci (eQTLs) help to explain the …
[PDF][PDF] DNA methylation analysis identifies loci for blood pressure regulation
…, P Deelen, I Nooren, M Moed, M Vermaat… - The American Journal of …, 2017 - cell.com
Genome-wide association studies have identified hundreds of genetic variants associated
with blood pressure (BP), but sequence variation accounts for a small fraction of the …
with blood pressure (BP), but sequence variation accounts for a small fraction of the …
[PDF][PDF] Improving phenotypic prediction by combining genetic and epigenetic associations
…, P Deelen, I Nooren, M Moed, M Vermaat… - The American Journal of …, 2015 - cell.com
We tested whether DNA-methylation profiles account for inter-individual variation in body
mass index (BMI) and height and whether they predict these phenotypes over and above …
mass index (BMI) and height and whether they predict these phenotypes over and above …
[HTML][HTML] Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing
Background The multifaceted control of gene expression requires tight coordination of
regulatory mechanisms at transcriptional and post-transcriptional level. Here, we studied the …
regulatory mechanisms at transcriptional and post-transcriptional level. Here, we studied the …
[HTML][HTML] Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects
…, M Van Tienhoven, M Vermaat… - European Journal of …, 2015 - nature.com
Implementation of next-generation DNA sequencing (NGS) technology into routine
diagnostic genome care requires strategic choices. Instead of theoretical discussions on the …
diagnostic genome care requires strategic choices. Instead of theoretical discussions on the …
[HTML][HTML] Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs
…, J Bot, P van't Hof, I Nooren, M Moed, M Vermaat… - Journal of …, 2016 - Elsevier
Genome-wide association and fine-mapping studies in 14 autoimmune diseases (AID) have
implicated more than 250 loci in one or more of these diseases. As more than 90% of AID-…
implicated more than 250 loci in one or more of these diseases. As more than 90% of AID-…
Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck
M Li, R Rothwell, M Vermaat, M Wachsmuth… - Genome …, 2016 - genome.cshlp.org
Although previous studies have documented a bottleneck in the transmission of mtDNA
genomes from mothers to offspring, several aspects remain unclear, including the size and …
genomes from mothers to offspring, several aspects remain unclear, including the size and …
Mutalyzer 2: next generation HGVS nomenclature checker
M Lefter, JK Vis, M Vermaat, JT den Dunnen… - …, 2021 - academic.oup.com
Motivation Unambiguous variant descriptions are of utmost importance in clinical genetic
diagnostics, scientific literature and genetic databases. The Human Genome Variation Society (…
diagnostics, scientific literature and genetic databases. The Human Genome Variation Society (…