An integrated mass spectrometric and computational framework for the analysis of protein interaction networks

O Rinner, LN Mueller, M Hubálek, M Müller… - Nature …, 2007 - nature.com
Biological systems are controlled by protein complexes that associate into dynamic protein
interaction networks. We describe a strategy that analyzes protein complexes through the …

[HTML][HTML] Cryo-EM structures of Trypanosoma brucei gambiense ISG65 with human complement C3 and C3b and their roles in alternative pathway restriction

…, F Zahedifard, A Šubrtova, M Šafner, M Hubalek… - Nature …, 2023 - nature.com
African Trypanosomes have developed elaborate mechanisms to escape the adaptive immune
response, but little is known about complement evasion particularly at the early stage of …

[HTML][HTML] Bacterial nanotubes as a manifestation of cell death

…, K Muchová, H Šanderová, M Hubálek… - Nature …, 2020 - nature.com
Bacterial nanotubes are membranous structures that have been reported to function as
conduits between cells to exchange DNA, proteins, and nutrients. Here, we investigate the …

[HTML][HTML] Human histone deacetylase 6 shows strong preference for tubulin dimers over assembled microtubules

…, D Trapl, P Baranova, B Havlinova, M Hubalek… - Scientific reports, 2017 - nature.com
Human histone deacetylase 6 (HDAC6) is the major deacetylase responsible for removing
the acetyl group from Lys40 of α-tubulin (αK40), which is located lumenally in polymerized …

[HTML][HTML] Random protein sequences can form defined secondary structures and are well-tolerated in vivo

…, K Hofbauerová, H Jindrová, M Hubálek… - Scientific Reports, 2017 - nature.com
The protein sequences found in nature represent a tiny fraction of the potential sequences
that could be constructed from the 20-amino-acid alphabet. To help define the properties that …

Proteomic analysis of wheat proteins recognized by IgE antibodies of allergic patients

P Šotkovský, M Hubálek, L Hernychová, P Novák… - …, 2008 - Wiley Online Library
Wheat belongs to six major food allergens inducing IgE‐mediated hypersensitivity reaction
manifesting as cutaneous, gastrointestinal, and respiratory symptoms. Although cereals are a …

[HTML][HTML] Dinucleoside polyphosphates act as 5′-RNA caps in bacteria

…, M Culka, H Šanderová, M Hubálek… - Nature …, 2020 - nature.com
It has been more than 50 years since the discovery of dinucleoside polyphosphates (Np n
Ns) and yet their roles and mechanisms of action remain unclear. Here, we show that both …

Proteomic analysis of anti‐Francisella tularensis LVS antibody response in murine model of tularemia

J Havlasová, L Hernychová, M Brychta, M Hubálek… - …, 2005 - Wiley Online Library
Francisella tularensis live vaccine strain infection of mice has been established as an
experimental model of tularemia that is suitable for studies of immune mechanisms against the …

[HTML][HTML] Human DNA-damage-inducible 2 protein is structurally and functionally distinct from its yeast ortholog

…, F Sedlák, J Belza, J Brynda, P Šácha, M Hubálek… - Scientific reports, 2016 - nature.com
Although Ddi1-like proteins are conserved among eukaryotes, their biological functions
remain poorly characterized. Yeast Ddi1 has been implicated in cell cycle regulation, DNA-…

1, 3‐Diketone‐Modified Nucleotides and DNA for Cross‐Linking with Arginine‐Containing Peptides and Proteins

DL Leone, M Hubálek, R Pohl, V Sýkorová… - Angewandte …, 2021 - Wiley Online Library
Linear or branched 1,3‐diketone‐linked thymidine 5′‐O‐mono‐ and triphosphate were
synthesized through CuAAC click reaction of diketone‐alkynes with 5‐azidomethyl‐dUMP or ‐…