User profiles for Massimo D. Sammito
Massimo Domenico SammitoAstraZeneca Verified email at cam.ac.uk Cited by 5182 |
[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
…, DC Richardson, MD Sammito… - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful
methods to determine three-dimensional macromolecular structures, which are required to …
methods to determine three-dimensional macromolecular structures, which are required to …
[HTML][HTML] Implications of AlphaFold2 for crystallographic phasing by molecular replacement
The AlphaFold2 results in the 14th edition of Critical Assessment of Structure Prediction (CASP14)
showed that accurate (low root-mean-square deviation) in silico models of protein …
showed that accurate (low root-mean-square deviation) in silico models of protein …
Assessing the utility of CASP14 models for molecular replacement
…, RM Keegan, J Pereira, MD Sammito… - Proteins: Structure …, 2021 - Wiley Online Library
The assessment of CASP models for utility in molecular replacement is a measure of their
use in a valuable real‐world application. In CASP7, the metric for molecular replacement …
use in a valuable real‐world application. In CASP7, the metric for molecular replacement …
Evaluation of template‐based modeling in CASP13
Performance in the template‐based modeling (TBM) category of CASP13 is assessed here,
using a variety of metrics. Performance of the predictor groups that participated is ranked …
using a variety of metrics. Performance of the predictor groups that participated is ranked …
The amphibian antimicrobial peptide uperin 3.5 is a cross-α/cross-β chameleon functional amyloid
…, MD Sammito, D Bloch… - Proceedings of the …, 2021 - National Acad Sciences
Antimicrobial activity is being increasingly linked to amyloid fibril formation, suggesting
physiological roles for some human amyloids, which have historically been viewed as strictly …
physiological roles for some human amyloids, which have historically been viewed as strictly …
[HTML][HTML] Verification: model-free phasing with enhanced predicted models in ARCIMBOLDO_SHREDDER
Structure predictions have matched the accuracy of experimental structures from close
homologues, providing suitable models for molecular replacement phasing. Even in predictions …
homologues, providing suitable models for molecular replacement phasing. Even in predictions …
Evaluation of model refinement in CASP13
RJ Read, MD Sammito… - Proteins: Structure …, 2019 - Wiley Online Library
Performance in the model refinement category of the 13th round of Critical Assessment of
Structure Prediction (CASP13) is assessed, showing that some groups consistently improve …
Structure Prediction (CASP13) is assessed, showing that some groups consistently improve …
ALEPH: a network-oriented approach for the generation of fragment-based libraries and for structure interpretation
The analysis of large structural databases reveals general features and relationships
among proteins, providing useful insight. A different approach is required to characterize …
among proteins, providing useful insight. A different approach is required to characterize …
Possible implications of AlphaFold2 for crystallographic phasing by molecular replacement
AJ McCoy, MD Sammito, RJ Read - BioRxiv, 2021 - biorxiv.org
The AlphaFold2 results in the 14 th edition of Critical Assessment of Structure Prediction (CASP14)
showed that accurate (low root-mean-square deviation) in silico models of protein …
showed that accurate (low root-mean-square deviation) in silico models of protein …
[HTML][HTML] Phasertng: directed acyclic graphs for crystallographic phasing
AJ McCoy, DH Stockwell, MD Sammito… - … Section D: Structural …, 2021 - scripts.iucr.org
Crystallographic phasing strategies increasingly require the exploration and ranking of many
hypotheses about the number, types and positions of atoms, molecules and/or molecular …
hypotheses about the number, types and positions of atoms, molecules and/or molecular …