User profiles for Matthew Vaughn

Matthew W. Vaughn

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Cited by 13782

The B73 maize genome: complexity, diversity, and dynamics

…, MJ Levy, L McMahan, P Van Buren, MW Vaughn… - science, 2009 - science.org
We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an
important crop plant and model for biological research. Over 32,000 genes were predicted, …

Role of transposable elements in heterochromatin and epigenetic control

Z Lippman, AV Gendrel, M Black, MW Vaughn… - Nature, 2004 - nature.com
Heterochromatin has been defined as deeply staining chromosomal material that remains
condensed in interphase, whereas euchromatin undergoes de-condensation 1 . …

[HTML][HTML] Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

RK Slotkin, M Vaughn, F Borges, M Tanurdžić… - Cell, 2009 - cell.com
The mutagenic activity of transposable elements (TEs) is suppressed by epigenetic silencing
and small interfering RNAs (siRNAs), especially in gametes that could transmit transposed …

[HTML][HTML] The iPlant collaborative: cyberinfrastructure for plant biology

SA Goff, M Vaughn, S McKay, E Lyons… - Frontiers in plant …, 2011 - frontiersin.org
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF)
funded project that aims to create an innovative, comprehensive, and foundational …

Comparative functional genomics of the fission yeasts

…, A Smialowska, P Swoboda, SM Sykes, M Vaughn… - Science, 2011 - science.org
The fission yeast clade—comprising Schizosaccharomyces pombe, S. octosporus, S. cryophilus,
and S. japonicus—occupies the basal branch of Ascomycete fungi and is an important …

[HTML][HTML] Epigenetic natural variation in Arabidopsis thaliana

MW Vaughn, M Tanurdžić, Z Lippman, H Jiang… - PLoS …, 2007 - journals.plos.org
Cytosine methylation of repetitive sequences is widespread in plant genomes, occurring in
both symmetric (CpG and CpNpG) as well as asymmetric sequence contexts. We used the …

[HTML][HTML] The iPlant collaborative: cyberinfrastructure for enabling data to discovery for the life sciences

N Merchant, E Lyons, S Goff, M Vaughn, D Ware… - PLoS …, 2016 - journals.plos.org
The iPlant Collaborative provides life science research communities access to comprehensive,
scalable, and cohesive computational infrastructure for data management; identity …

Araport: the Arabidopsis information portal

…, JR Miller, G Micklem, M Vaughn… - Nucleic acids …, 2015 - academic.oup.com
The Arabidopsis Information Portal ( https://www.araport.org ) is a new online resource for
plant biology research. It houses the Arabidopsis thaliana genome sequence and associated …

Epigenetic and genetic influences on DNA methylation variation in maize populations

…, E Starr, PT West, P Tiffin, CL Myers, MW Vaughn… - The Plant …, 2013 - academic.oup.com
DNA methylation is a chromatin modification that is frequently associated with epigenetic
regulation in plants and mammals. However, genetic changes such as transposon insertions …

Sucrose-mediated transcriptional regulation of sucrose symporter activity in the phloem

MW Vaughn, GN Harrington… - Proceedings of the …, 2002 - National Acad Sciences
A proton–sucrose symporter mediates the key step in carbon export from leaves of most
plants. Sucrose transport activity and steady-state mRNA levels of BvSUT1, a sugar beet leaf …