User profiles for Mattias Ormestad

Mattias Ormestad

Science for Life Laboratory
Verified email at scilifelab.se
Cited by 1142

The forkhead transcription factor Foxf1 is required for differentiation of extra-embryonic and lateral plate mesoderm

M Mahlapuu, M Ormestad, S Enerbäck… - …, 2001 - journals.biologists.com
The murine Foxf1 gene encodes a forkhead transcription factor expressed in extra-embryonic
and lateral plate mesoderm and later in splanchnic mesenchyme surrounding the gut and …

Foxf1 and Foxf2 control murine gut development by limiting mesenchymal Wnt signaling and promoting extracellular matrix production

M Ormestad, J Astorga, H Landgren, T Wang… - 2006 - journals.biologists.com
Development of the vertebrate gut is controlled by paracrine crosstalk between the endodermal
epithelium and the associated splanchnic mesoderm. In the adult, the same types of …

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

T van der Valk, F Vezzi, M Ormestad… - Molecular ecology …, 2020 - Wiley Online Library
The high‐throughput capacities of the Illumina sequencing platforms and the possibility to
label samples individually have encouraged wide use of sample multiplexing. However, this …

[HTML][HTML] Foxe3 haploinsufficiency in mice: a model for Peters' anomaly

M Ormestad, A Blixt, A Churchill… - … & visual science, 2002 - iovs.arvojournals.org
purpose. To evaluate the importance in anterior segment dysgenesis of genetic variation in
Foxe3, a gene encoding a forkhead transcription factor specifically expressed in the lens. …

Relationship between AMPK and the transcriptional balance of clock-related genes in skeletal muscle

…, EC Nilsson, A Nerstedt, M Ormestad… - American Journal …, 2008 - journals.physiology.org
Circadian clocks coordinate physiological, behavioral, and biochemical events with predictable
daily environmental changes by a self-sustained transcriptional feedback loop. CLOCK …

[HTML][HTML] Chromatin insulation orchestrates matrix metalloproteinase gene cluster expression reprogramming in aggressive breast cancer tumors

…, AF Bedoya-López, B Sesé, A Mezger, M Ormestad… - Molecular cancer, 2023 - Springer
Background Triple-negative breast cancer (TNBC) is an aggressive subtype that exhibits a
high incidence of distant metastases and lacks targeted therapeutic options. Here we …

Differences in the embryonic expression patterns of mouse Foxf1 and ‐2 match their distinct mutant phenotypes

M Ormestad, J Astorga… - … dynamics: an official …, 2004 - Wiley Online Library
Murine genes encoding the forkhead transcription factors Foxf1 and ‐2 are both expressed
in derivatives of the splanchnic mesoderm, ie, the mesenchyme of organs derived from the …

[HTML][HTML] 3-D chromatin conformation, accessibility, and gene expression profiling of triple-negative breast cancer

…, YZ Tran, L Yao, F Bonath, RA Olsen, M Ormestad… - BMC genomic data, 2023 - Springer
Mattias Ormestad designed the sequencing experiments. Pere Llinàs-Arias and Sandra
Íñiguez-Muñoz were responsible for sample preparation. Anja Mezger and Mattias Ormestad

[HTML][HTML] A comparative gene expression database for invertebrates

M Ormestad, MQ Martindale, E Röttinger - Evodevo, 2011 - Springer
Background As whole genome and transcriptome sequencing gets cheaper and faster, a
great number of 'exotic' animal models are emerging, rapidly adding valuable data to the ever-…

Low rate of index hopping on the Illumina HiSeq X platform

T der Valk, F Vezzi, M Ormestad, L Dalén… - BioRxiv, 2017 - biorxiv.org
The high throughput capacities of the Illumina sequencing platforms and the possibility to
label samples with unique identifiers has encouraged a wide use of sample multiplexing. …