User profiles for Melanie Prarat

Melanie Prarat

Ohio Animal Disease Diagnostic Laboratory
Verified email at agri.ohio.gov
Cited by 800

[HTML][HTML] GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

…, J Sanders, WJ Wolfgang, K Libuit, JB Herrick, M Prarat… - BMC genomics, 2021 - Springer
Background Processing and analyzing whole genome sequencing (WGS) is computationally
intense: a single Illumina MiSeq WGS run produces ~ 1 million 250-base-pair reads for …

[HTML][HTML] Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative …

…, LB Goodman, PK Mitchell, Y Zhang, M Prarat… - BMC veterinary …, 2019 - Springer
Background Antimicrobial resistance (AMR) of bacterial pathogens is an emerging public
health threat. This threat extends to pets as it also compromises our ability to treat their …

Metagenomic sequencing for identification of Xylella fastidiosa from leaf samples

…, G Marchi, S Campigli, MA Hansen, E Bush, M Prarat… - Msystems, 2021 - Am Soc Microbiol
Xylella fastidiosa (Xf) is a globally distributed plant-pathogenic bacterium. The primary
control strategy for Xf diseases is eradicating infected plants; therefore, timely and accurate …

[HTML][HTML] New variants of porcine epidemic diarrhea virus with large deletions in the spike protein, identified in the United States, 2016-2017

Y Su, Y Hou, M Prarat, Y Zhang, Q Wang - Archives of virology, 2018 - Springer
Four types of porcine epidemic diarrhea virus (PEDV) variants with a large deletion in the
spike protein were detected, together with the original US PEDV, from pig fecal and oral fluid …

[HTML][HTML] Detection and genomic characterization of Senecavirus A, Ohio, USA, 2015

L Wang, M Prarat, J Hayes, Y Zhang - Emerging infectious diseases, 2016 - ncbi.nlm.nih.gov
Using a day as our unit of analysis (ie, n= 60 in the analysis), we first assessed Pearson
product-moment correlations between news coverage, social media mentions, and online …

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

…, R Franklin-Guild, Y Zhang, M Prarat… - Microbial …, 2022 - microbiologyresearch.org
There is a growing need for public health and veterinary laboratories to perform whole
genome sequencing (WGS) for monitoring antimicrobial resistance (AMR) and protecting the …

Genomics accurately predicts antimicrobial resistance in Staphylococcus pseudintermedius collected as part of Vet-LIRN resistance monitoring

…, BD Cronk, M Aprea, J Cui, D Jurkovic, M Prarat… - Veterinary …, 2021 - Elsevier
Whole-genome sequencing (WGS) has changed our understanding of bacterial pathogens,
aiding outbreak investigations and advancing our knowledge of their genetic features. …

Patterns of gene expression in swine macrophages infected with classical swine fever virus detected by microarray

…, LG Holinka, I Fernandez-Sainz, C Carrillo, MV Prarat… - Virus Research, 2010 - Elsevier
Infection of domestic swine with highly virulent, classical swine fever virus (CSFV) strain
Brescia, causes lethal disease in all infected animals. However, the molecular mechanisms …

Antimicrobial-Resistant Escherichia coli, Enterobacter cloacae, Enterococcus faecium, and Salmonella Kentucky Harboring Aminoglycoside and Beta-Lactam …

…, A Conley, S Barua, DFB Murillo, M Prarat… - Foodborne …, 2023 - liebertpub.com
The practice of feeding raw meat-based diets to dogs has grown in popularity worldwide in
recent years. However, there are public health risks in handling and feeding raw meat-based …

Next-generation sequencing capacity and capabilities within the National Animal Health Laboratory Network

B Harris, J Hicks, M Prarat… - Journal of Veterinary …, 2021 - journals.sagepub.com
With the cost of next-generation sequencing (NGS) decreasing, this technology is rapidly
being integrated into the workflows of veterinary clinical and diagnostic laboratories nationwide…