The Pfam protein families database

…, S Griffiths‐Jones, A Khanna, M Marshall… - Nucleic acids …, 2004 - academic.oup.com
Pfam is a large collection of protein families and domains. Over the past 2 years the number
of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology …

A census of human cancer genes

PA Futreal, L Coin, M Marshall, T Down… - Nature reviews …, 2004 - nature.com
A central aim of cancer research has been to identify the mutated genes that are causally
implicated in oncogenesis ('cancer genes'). After two decades of searching, how many have …

The Pfam protein families database

…, S Griffiths-Jones, KL Howe, M Marshall… - Nucleic acids …, 2002 - academic.oup.com
Pfam is a large collection of protein multiple sequence alignments and profile hidden
Markov models. Pfam is available on the World Wide Web in the UK at http://www.sanger.ac.uk/…

Pfam: clans, web tools and services

…, T Lassmann, S Moxon, M Marshall… - Nucleic acids …, 2006 - academic.oup.com
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A
recent development in Pfam has enabled the grouping of related families into clans. Pfam …

A uniform system for microRNA annotation

…, G Dreyfuss, SR Eddy, SAM Griffiths-Jones, M Marshall… - Rna, 2003 - rnajournal.cshlp.org
MicroRNAs (miRNAs) are small noncoding RNA gene products about 22 nt long that are
processed by Dicer from precursors with a characteristic hairpin secondary structure. …

Rfam: an RNA family database

S Griffiths-Jones, A Bateman, M Marshall… - Nucleic acids …, 2003 - academic.oup.com
Rfam is a collection of multiple sequence alignments and covariance models representing
non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/…

Rfam: annotating non-coding RNAs in complete genomes

S Griffiths-Jones, S Moxon, M Marshall… - Nucleic acids …, 2005 - academic.oup.com
Rfam is a comprehensive collection of non-coding RNA (ncRNA) families, represented by
multiple sequence alignments and profile stochastic context-free grammars. Rfam aims to …

Whole‐genome sequencing identifies EN1 as a determinant of bone density and fracture

…, A Hofman, C Wibom, GJ Tranah, M Marshall… - Nature, 2015 - nature.com
The extent to which low‐frequency (minor allele frequency (MAF) between 1–5%) and rare (MAF
≤ 1%) variants contribute to complex traits and disease in the general population is …

Brief report: intestinal dysbiosis in ankylosing spondylitis

…, PC Robinson, B Gardiner, M Marshall… - Arthritis & …, 2015 - Wiley Online Library
Objective Ankylosing spondylitis (AS) is a common, highly heritable immune‐mediated
arthropathy that occurs in genetically susceptible individuals exposed to an unknown but likely …

i Pfam: visualization of protein–protein interactions in pdb at domain and amino acid resolutions

RD Finn, M Marshall, A Bateman - Bioinformatics, 2005 - academic.oup.com
There are many resources that contain information about binary interactions between proteins.
However, protein interactions are defined by only a subset of residues in any protein. We …