User profiles for Michael Clerx

Michael Clerx

Researcher, University of Nottingham
Verified email at nottingham.ac.uk
Cited by 708

Myokit: a simple interface to cardiac cellular electrophysiology

M Clerx, P Collins, E De Lange, PGA Volders - Progress in biophysics and …, 2016 - Elsevier
Myokit is a new powerful and versatile software tool for modeling and simulation of cardiac
cellular electrophysiology. Myokit consists of an easy-to-read modeling language, a graphical …

Calibration of ionic and cellular cardiac electrophysiology models

DG Whittaker, M Clerx, CL Lei… - … Systems Biology and …, 2020 - Wiley Online Library
Cardiac electrophysiology models are among the most mature and well‐studied mathematical
models of biological systems. This maturity is bringing new challenges as models are …

[PDF][PDF] Four ways to fit an ion channel model

M Clerx, KA Beattie, DJ Gavaghan, GR Mirams - Biophysical Journal, 2019 - cell.com
Mathematical models of ionic currents are used to study the electrophysiology of the heart,
brain, gut, and several other organs. Increasingly, these models are being used predictively in …

Probabilistic inference on noisy time series (PINTS)

M Clerx, M Robinson, B Lambert, CL Lei… - arXiv preprint arXiv …, 2018 - arxiv.org
Time series models are ubiquitous in science, arising in any situation where researchers seek
to understand how a system's behaviour changes over time. A key problem in time series …

[HTML][HTML] Reproducible model development in the cardiac electrophysiology Web Lab

AC Daly, M Clerx, KA Beattie, J Cooper… - Progress in biophysics …, 2018 - Elsevier
The modelling of the electrophysiology of cardiac cells is one of the most mature areas of
systems biology. This extended concentration of research effort brings with it new challenges, …

Accounting for variability in ion current recordings using a mathematical model of artefacts in voltage-clamp experiments

CL Lei, M Clerx, DG Whittaker… - … of the Royal …, 2020 - royalsocietypublishing.org
Mathematical models of ion channels, which constitute indispensable components of action
potential models, are commonly constructed by fitting to whole-cell patch-clamp data. In a …

[PDF][PDF] Rapid characterization of hERG channel kinetics I: using an automated high-throughput system

CL Lei, M Clerx, DJ Gavaghan, L Polonchuk… - Biophysical …, 2019 - cell.com
Predicting how pharmaceuticals may affect heart rhythm is a crucial step in drug development
and requires a deep understanding of a compound's action on ion channels. In vitro hERG …

CellML 2.0

M Clerx, MT Cooling, J Cooper, A Garny… - Journal of Integrative …, 2020 - degruyter.com
We present here CellML 2.0, an XML-based language for describing and exchanging
mathematical models of physiological systems. MathML embedded in CellML documents is used …

[PDF][PDF] Rapid characterization of hERG channel kinetics II: temperature dependence

CL Lei, M Clerx, KA Beattie, D Melgari, JC Hancox… - Biophysical …, 2019 - cell.com
Ion channel behavior can depend strongly on temperature, with faster kinetics at physiological
temperatures leading to considerable changes in currents relative to room temperature. …

Autocorrelated measurement processes and inference for ordinary differential equation models of biological systems

…, CL Lei, M Robinson, M Clerx… - Journal of the …, 2023 - royalsocietypublishing.org
Ordinary differential equation models are used to describe dynamic processes across
biology. To perform likelihood-based parameter inference on these models, it is necessary to …