User profiles for Michael PH Stumpf

Michael PH Stumpf

Professor of Theoretical Systems Biology, University of Melbourne
Verified email at unimelb.edu.au
Cited by 18429

Estimating recombination rates from population-genetic data

MPH Stumpf, GAT McVean - Nature Reviews Genetics, 2003 - nature.com
Obtaining an accurate measure of how recombination rates vary across the genome has
implications for understanding the molecular basis of recombination, its evolutionary …

Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology

…, M Huvet, T Toni, X Sheng, MPH Stumpf… - FEMS microbiology …, 2010 - academic.oup.com
The bacterial phage shock protein (Psp) response functions to help cells manage the impacts
of agents impairing cell membrane function. The system has relevance to biotechnology …

Model selection in systems and synthetic biology

P Kirk, T Thorne, MPH Stumpf - Current opinion in biotechnology, 2013 - Elsevier
Developing mechanistic models has become an integral aspect of systems biology, as has
the need to differentiate between alternative models. Parameterizing mathematical models …

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

…, N Strelkowa, A Ipsen, MPH Stumpf - Journal of the …, 2009 - royalsocietypublishing.org
Approximate Bayesian computation (ABC) methods can be used to evaluate posterior
distributions without having to calculate likelihoods. In this paper, we discuss and apply an ABC …

[HTML][HTML] Evolution of pathogenicity and sexual reproduction in eight Candida genomes

…, D Soll, R Staggs, I Stansfield, MPH Stumpf… - Nature, 2009 - nature.com
Candida species are the most common cause of opportunistic fungal infection worldwide.
Here we report the genome sequences of six Candida species and compare these and related …

Estimating the size of the human interactome

MPH Stumpf, T Thorne, E De Silva… - Proceedings of the …, 2008 - National Acad Sciences
After the completion of the human and other genome projects it emerged that the number of
genes in organisms as diverse as fruit flies, nematodes, and humans does not reflect our …

Critical truths about power laws

MPH Stumpf, MA Porter - Science, 2012 - science.org
The ability to summarize observations using explanatory and predictive theories is the
greatest strength of modern science. A theoretical framework is perceived as particularly …

Subnets of scale-free networks are not scale-free: sampling properties of networks

MPH Stumpf, C Wiuf, RM May - Proceedings of the National …, 2005 - National Acad Sciences
Most studies of networks have only looked at small subsets of the true network. Here, we
discuss the sampling properties of a network's degree distribution under the most parsimonious …

Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics

S Mead, MPH Stumpf, J Whitfield, JA Beck, M Poulter… - Science, 2003 - science.org
Kuru is an acquired prion disease largely restricted to the Fore linguistic group of the Papua
New Guinea Highlands, which was transmitted during endocannibalistic feasts. …

[HTML][HTML] Gene regulatory network inference from single-cell data using multivariate information measures

TE Chan, MPH Stumpf, AC Babtie - Cell systems, 2017 - cell.com
While single-cell gene expression experiments present new challenges for data processing,
the cell-to-cell variability observed also reveals statistical relationships that can be used by …