MGnify ( http://www.ebi.ac.uk/metagenomics ) provides a free to use platform for the
assembly, analysis and archiving of microbiome data derived from sequencing microbial …

The khmer package is a freely available software library for working efficiently with fixed length
DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting …

… Libraries to generate and/or read CWL documents exist in many languages: Python, Java,
R, Go, Scala, Javascript, Typescript, and C++. … Michael R. Crusoe is a promovendus at …

The Common Workflow Language (CWL) is an informal, multi-vendor working group
consisting of various organizations and individuals that have an interest in portability of data …

… Michael R. Crusoe is one of the co-founders of the Common Workflow Language project
and the CWL Project Lead. His facilitation, technical contributions, and training on behalf of …

Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

Software Containers are changing the way scientists and researchers develop, deploy and
exchange scientific software. They allow labs of all sizes to easily install bioinformatics …

Squamates include all lizards and snakes, and display some of the most diverse and
extreme morphological adaptations among vertebrates. However, compared with birds and …

Biological, clinical, and pharmacological research now often involves analyses of genomes,
transcriptomes, proteomes, and interactomes, within and between individuals and across …

A personalized approach based on a patient's or pathogen’s unique genomic sequence is
the foundation of precision medicine. Genomic findings must be robust and reproducible, and …