[HTML][HTML] An atlas of combinatorial transcriptional regulation in mouse and man

…, T Arakawa, N Ninomiya, K Murakami, M Tagami… - Cell, 2010 - cell.com
Combinatorial interactions among transcription factors are critical to directing tissue-specific
gene expression. To build a global atlas of these combinations, we have screened for …

CAGE: cap analysis of gene expression

…, H Nishiyori, M Nakamura, S Fukuda, M Tagami… - Nature …, 2006 - nature.com
Transcript abundance can be determined by various methods, including reverse transcription
(RT)-PCR, microarray analysis, sequencing of expressed sequence tags (ESTs), serial …

[HTML][HTML] Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

…, K Ikuta, T Mizutani, Y Okamoto, M Tagami… - PloS one, 2009 - journals.plos.org
With the severe acute respiratory syndrome epidemic of 2003 and renewed attention on avian
influenza viral pandemics, new surveillance systems are needed for the earlier detection …

[HTML][HTML] FANTOM5 CAGE profiles of human and mouse samples

…, A Saka, M Sakai, C Simon, N Suzuki, M Tagami… - Scientific data, 2017 - nature.com
In the FANTOM5 project, transcription initiation events across the human and mouse genomes
were mapped at a single base-pair resolution and their frequencies were monitored by …

Functional annotation of human long noncoding RNAs via molecular phenotyping

…, T Suzuki, SC Szumowski, M Tagami… - Genome …, 2020 - genome.cshlp.org
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

…, S Noguchi, CW Yip, JLC Ooi, M Tagami… - Nucleic acids …, 2021 - academic.oup.com
The Functional ANnoTation Of the Mammalian genome (FANTOM) Consortium has continued
to provide extensive resources in the pursuit of understanding the transcriptome, and …

[HTML][HTML] A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

…, T Masaoka, H Okamoto, K Hayashida, M Tagami… - BMC genomics, 2010 - Springer
Background Japanese flounder (Paralichthys olivaceus) is one of the most economically
important marine species in Northeast Asia. Information on genetic markers associated with …

[HTML][HTML] Genome-wide investigation of in vivoEGR-1 binding sites in monocytic differentiation

A Kubosaki, Y Tomaru, M Tagami, E Arner, H Miura… - Genome biology, 2009 - Springer
Background Immediate early genes are considered to play important roles in dynamic gene
regulatory networks following exposure to appropriate stimuli. One of the immediate early …

[PDF][PDF] Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types

…, YJ Lan, J Dostie, A Petri, H Nishiyori-Sueki, M Tagami… - Cell reports, 2022 - cell.com
Within the scope of the FANTOM6 consortium, we perform a large-scale knockdown of 200
long non-coding RNAs (lncRNAs) in human induced pluripotent stem cells (iPSCs) and …

A non-human primate model of familial Alzheimer's disease

…, N Mihira, K Sato, T Sakuma, T Yamamoto, M Tagami… - Biorxiv, 2020 - biorxiv.org
Alzheimer’s disease (AD) is a major cause of dementia, with the number of patients with this
condition anticipated to exceed 50 million worldwide in the near future. Despite extensive …