SBML Level 3: an extensible format for the exchange and reuse of biological models

…, RMT Fleming, M Fröhlich, M Glont… - Molecular systems …, 2020 - embopress.org
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …

BioModels: ten-year anniversary

…, I Ajmera, R Ali, M Dumousseau, M Glont… - Nucleic acids …, 2015 - academic.oup.com
BioModels ( http://www.ebi.ac.uk/biomodels/ ) is a repository of mathematical models of
biological processes. A large set of models is curated to verify both correspondence to the …

BioModels—15 years of sharing computational models in life science

RS Malik-Sheriff, M Glont, TVN Nguyen… - Nucleic acids …, 2020 - academic.oup.com
Computational modelling has become increasingly common in life science research. To
provide a platform to support universal sharing, easy accessibility and model reproducibility, …

[HTML][HTML] Path2Models: large-scale generation of computational models from biochemical pathway maps

…, R Keller, F Mittag, M Schubert, M Glont… - BMC systems …, 2013 - Springer
Background Systems biology projects and omics technologies have led to a growing
number of biochemical pathway models and reconstructions. However, the majority of these …

[HTML][HTML] COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

…, R Adams, S Moodie, J Cooper, M Glont… - BMC …, 2014 - Springer
Background With the ever increasing use of computational models in the biosciences, the
need to share models and reproduce the results of published studies efficiently and easily is …

Reproducibility in systems biology modelling

…, J Men, S Ng, TVN Nguyen, M Glont… - Molecular systems …, 2021 - embopress.org
Reproducibility of scientific results is a key element of science and credibility. The lack of
reproducibility across many scientific fields has emerged as an important concern. In this piece, …

The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing

…, C Cummins, Y Fathy, E Felix, M Glont… - Nucleic acids …, 2021 - academic.oup.com
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic will be
remembered as one of the defining events of the 21st century. The rapid global outbreak has had …

[HTML][HTML] Quantifying the impact of public omics data

…, A Zorin, G Dass, MT Vu, P Xu, M Glont… - Nature …, 2019 - nature.com
The amount of omics data in the public domain is increasing every year. Modern science has
become a data-intensive discipline. Innovative solutions for data management, data sharing…

BioModels: expanding horizons to include more modelling approaches and formats

M Glont, TVN Nguyen, M Graesslin… - Nucleic Acids …, 2018 - academic.oup.com
BioModels serves as a central repository of mathematical models representing biological
processes. It offers a platform to make mathematical models easily shareable across the …

BioModels: content, features, functionality, and use

N Juty, R Ali, M Glont, S Keating… - CPT …, 2015 - Wiley Online Library
BioModels is a reference repository hosting mathematical models that describe the dynamic
interactions of biological components at various scales. The resource provides access to …