The European Red List is a review of the status of European species according to IUCN
regional Red Listing guidelines. It identifies those species that are threatened with extinction at …

We present the results for CAPRI Round 50, the fourth joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of twelve targets, including six dimers, …

We present the results for CAPRI Round 46, the third joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of 20 targets including 14 homo‐oligomers …

The design of PROteolysis-TArgeting Chimeras (PROTACs) requires bringing an E3 ligase
into proximity with a target protein to modulate the concentration of the latter through its …

The process of creating a model of the structure formed by a pair of interacting molecules is
commonly referred to as docking. Protein docking is one of the most studied topics in …

In the ligand prediction category of CASP15, the challenge was to predict the positions and
conformations of small molecules binding to proteins that were provided as amino acid …

The template-based approach has been essential for achieving high-quality models in the
recent rounds of blind protein-protein docking competition CAPRI (Critical Assessment of …

As a participant in the joint CASP13‐CAPRI46 assessment, the ClusPro server debuted its
new template‐based modeling functionality. The addition of this feature, called ClusPro TBM, …

We describe a new template-based method for docking flexible ligands such as macrocycles
to proteins. It combines Monte-Carlo energy minimization on the manifold, a fast manifold …

We have recently demonstrated that incorporation of small-angle X-ray scattering (SAXS)-based
filtering in our heavily used docking server ClusPro improves docking results. However, …