Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
…, H Kawamoto, L M. Khachigian, SP Klinken, S Kojima… - Science, 2015 - science.org
Although it is generally accepted that cellular differentiation requires changes to transcriptional
networks, dynamic regulation of promoters and enhancers at specific sets of genes has …
networks, dynamic regulation of promoters and enhancers at specific sets of genes has …
CAGE: cap analysis of gene expression
R Kodzius, M Kojima, H Nishiyori, M Nakamura… - Nature …, 2006 - nature.com
Transcript abundance can be determined by various methods, including reverse transcription
(RT)-PCR, microarray analysis, sequencing of expressed sequence tags (ESTs), serial …
(RT)-PCR, microarray analysis, sequencing of expressed sequence tags (ESTs), serial …
[HTML][HTML] FANTOM5 CAGE profiles of human and mouse samples
…, M Kanamori-Katayama, T Kawashima, M Kojima… - Scientific data, 2017 - nature.com
In the FANTOM5 project, transcription initiation events across the human and mouse genomes
were mapped at a single base-pair resolution and their frequencies were monitored by …
were mapped at a single base-pair resolution and their frequencies were monitored by …
Unamplified cap analysis of gene expression on a single-molecule sequencer
…, H Kawaji, T Lassmann, S Katayama, M Kojima… - Genome …, 2011 - genome.cshlp.org
We report the development of a simplified cap analysis of gene expression (CAGE) protocol
adapted for single-molecule sequencers that avoids second strand synthesis, ligation, …
adapted for single-molecule sequencers that avoids second strand synthesis, ligation, …
Functional annotation of human long noncoding RNAs via molecular phenotyping
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …
genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we …
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
…, AJ Knox, M Kojima, S Kojima… - Proceedings of the …, 2014 - National Acad Sciences
Naturally occurring regulatory T (Treg) cells, which specifically express the transcription
factor forkhead box P3 (Foxp3), are engaged in the maintenance of immunological self-…
factor forkhead box P3 (Foxp3), are engaged in the maintenance of immunological self-…
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
…, G Pascarella, A Chalk, N Maeda, M Kojima… - Genome …, 2009 - genome.cshlp.org
Finding and characterizing mRNAs, their transcription start sites (TSS), and their associated
promoters is a major focus in post-genome biology. Mammalian cells have at least 5–10 …
promoters is a major focus in post-genome biology. Mammalian cells have at least 5–10 …
Randomized, multicenter, comparative study of NEURO versus CIMT in poststroke patients with upper limb hemiparesis: the NEURO-VERIFY Study
…, R Momosaki, H Harashima, M Kojima… - … Journal of Stroke, 2014 - journals.sagepub.com
Background Many poststroke patients suffer functional motor limitation of the affected upper
limb, which is associated with diminished health-related quality of life. Aims The aim of this …
limb, which is associated with diminished health-related quality of life. Aims The aim of this …
Simple fabrication of honeycomb-and pincushion-structured films containing thermoresponsive polymers and their surface wettability
H Yabu, Y Hirai, M Kojima, M Shimomura - Chemistry of Materials, 2009 - ACS Publications
Honeycomb- and pincushion-structured films with thermoresponsive functionalities were
fabricated by using the self-organization process. Amphiphilic copolymers with …
fabricated by using the self-organization process. Amphiphilic copolymers with …
Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets
…, K Takano, A Higashida, M Kojima… - Journal of the …, 2023 - ACS Publications
Establishing a technological platform for creating clinical compounds inhibiting intracellular
protein–protein interactions (PPIs) can open the door to many valuable drugs. Although …
protein–protein interactions (PPIs) can open the door to many valuable drugs. Although …