User profiles for Mingyue Zheng

Mingyue Zheng

Shanghai Institute of Materia Medica, Chinese Academy of Sciences
Verified email at simm.ac.cn
Cited by 7483

Pushing the boundaries of molecular representation for drug discovery with the graph attention mechanism

…, Z Li, X Luo, K Chen, H Jiang, M Zheng - Journal of medicinal …, 2019 - ACS Publications
Hunting for chemicals with favorable pharmacological, toxicological, and pharmacokinetic
properties remains a formidable challenge for drug discovery. Deep learning provides us with …

Discovery of highly potent, selective, and orally efficacious p300/CBP histone acetyltransferases inhibitors

…, J Xing, H Feng, J Han, H Jiang, M Zheng… - Journal of medicinal …, 2020 - ACS Publications
p300 and CREB-binding protein (CBP) are ubiquitously expressed pleiotropic lysine
acetyltransferases and play a key role as transcriptional co-activators that are essential for a …

Optimization of metabolomic data processing using NOREVA

…, J Tang, Q Yang, H Sun, W Qiu, Y Ma, Z Li, M Zheng… - Nature protocols, 2022 - nature.com
A typical output of a metabolomic experiment is a peak table corresponding to the intensity
of measured signals. Peak table processing, an essential procedure in metabolomics, is …

TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments

…, X Liu, T Yang, X Luo, K Chen, H Jiang, M Zheng - …, 2020 - academic.oup.com
Motivation Identifying compound–protein interaction (CPI) is a crucial task in drug discovery
and chemogenomics studies, and proteins without three-dimensional structure account for a …

In silico ADME/T modelling for rational drug design

…, X Liu, X Luo, C Luo, K Chen, M Zheng… - Quarterly reviews of …, 2015 - cambridge.org
In recent decades, in silico absorption, distribution, metabolism, excretion (ADME), and toxicity
(T) modelling as a tool for rational drug design has received considerable attention from …

Generative models for de novo drug design

…, Z Xiong, T Xu, H Jiang, N Qiao, M Zheng - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models have
received much attention in recent years. Inspired by these successes, researchers are now …

Preclinical characterization of anlotinib, a highly potent and selective vascular endothelial growth factor receptor‐2 inhibitor

C Xie, X Wan, H Quan, M Zheng, L Fu, Y Li… - Cancer …, 2018 - Wiley Online Library
Abrogating tumor angiogenesis by inhibiting vascular endothelial growth factor receptor‐2 (
VEGFR 2) has been established as a therapeutic strategy for treating cancer. However, …

Graph neural network approaches for drug-target interactions

…, D Wang, J Jiang, S Zhang, H Jiang, M Zheng… - Current Opinion in …, 2022 - Elsevier
Developing new drugs remains prohibitively expensive, time-consuming, and often involves
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …

[HTML][HTML] Engineered bioorthogonal POLY-PROTAC nanoparticles for tumour-specific protein degradation and precise cancer therapy

…, L Yang, X Jiang, Z Zou, X Li, T Xu, M Zheng… - Nature …, 2022 - nature.com
PROteolysis TArgeting Chimeras (PROTACs) has been exploited to degrade putative protein
targets. However, the antitumor performance of PROTACs is impaired by their insufficient …

Graph neural networks for automated de novo drug design

J Xiong, Z Xiong, K Chen, H Jiang, M Zheng - Drug discovery today, 2021 - Elsevier
Highlights • GNN has attracted wide attention from the field of designing drug molecules. •
The applications of GNN in molecule scoring, molecule generation and optimization, and …