[HTML][HTML] Analysis of super-resolution single molecule localization microscopy data: A tutorial

M Fazel, MJ Wester - AIP advances, 2022 - pubs.aip.org
The diffraction of light imposes a fundamental limit on the resolution of light microscopes. This
limit can be circumvented by creating and exploiting independent behaviors of the sample …

[HTML][HTML] High-precision estimation of emitter positions using Bayesian grouping of localizations

M Fazel, MJ Wester, DJ Schodt, SR Cruz… - Nature …, 2022 - nature.com
Single-molecule localization microscopy super-resolution methods rely on stochastic
blinking/binding events, which often occur multiple times from each emitter over the course of data …

[PDF][PDF] High resolution fluorescence lifetime maps from minimal photon counts

M Fazel, S Jazani, L Scipioni, A Vallmitjana, E Gratton… - Biophysical …, 2022 - cell.com
Fluorescence lifetime imaging microscopy (FLIM) can be used to probe concentration profiles
of key marco-molecules within sub-cellular environments. However, current analyses for …

Hessian matrix, specific heats, Nambu brackets, and thermodynamic geometry

SAH Mansoori, B Mirza, M Fazel - Journal of High Energy Physics, 2015 - Springer
As an extension to our earlier work [1], we employ the Nambu brackets to prove that the
divergences of heat capacities correspond to their counterparts in thermodynamic geometry. We …

[HTML][HTML] Constipation in Iran: SEPAHAN systematic review No. 5

…, P Daneshpajouhnejad, M Fazel… - … Journal of Preventive …, 2012 - ncbi.nlm.nih.gov
Background: Constipation is physically and mentally troublesome for many patients and has
adverse effects on their quality of life. The aim of the present study was to systematically …

Template-free 2D particle fusion in localization microscopy

…, F Schueder, MT Strauss, B Van Werkhoven, M Fazel… - Nature …, 2018 - nature.com
Methods that fuse multiple localization microscopy images of a single structure can improve
signal-to-noise ratio and resolution, but they generally suffer from template bias or sensitivity …

[HTML][HTML] Comparing lifeact and phalloidin for super-resolution imaging of actin in fixed cells

H Mazloom-Farsibaf, F Farzam, M Fazel, MJ Wester… - PLoS …, 2021 - journals.plos.org
Visualizing actin filaments in fixed cells is of great interest for a variety of topics in cell biology
such as cell division, cell movement, and cell signaling. We investigated the possibility of …

[PDF][PDF] Single-photon smFRET: II. Application to continuous illumination

A Saurabh, M Safar, M Fazel, I Sgouralis, S Pressé - Biophysical Reports, 2023 - cell.com
Here we adapt the Bayesian nonparametrics (BNP) framework presented in the first companion
article to analyze kinetics from single-photon, single-molecule Förster resonance energy …

[HTML][HTML] Gastroesophageal reflux disease in Iran: SEPAHAN systematic review No. 2

M Fazel, AH Keshteli, P Jahangiri… - … journal of preventive …, 2012 - ncbi.nlm.nih.gov
BACKGROUND: Gastroesophageal reflux disease (GERD) is one of the most prevalent
disorders affecting gastrointestinal tract with a wide range of frequency around the world. In this …

[PDF][PDF] Single-photon smFRET. I: Theory and conceptual basis

A Saurabh, M Fazel, M Safar, I Sgouralis, S Pressé - Biophysical Reports, 2023 - cell.com
We present a unified conceptual framework and the associated software package for single-molecule
Förster resonance energy transfer (smFRET) analysis from single-photon arrivals …