User profiles for Morgan Schwartz

Morgan Schwartz

PhD Candidate, Caltech
Verified email at caltech.edu
Cited by 639

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

…, BJ McIntosh, KX Leow, MS Schwartz… - Nature …, 2022 - nature.com
A principal challenge in the analysis of tissue imaging data is cell segmentation—the task of
identifying the precise boundary of every cell in an image. To address this problem we …

[HTML][HTML] A spatially resolved timeline of the human maternal–fetal interface

…, M Goldston, A Spence, G Miller, M Schwartz… - Nature, 2023 - nature.com
Beginning in the first trimester, fetally derived extravillous trophoblasts (EVTs) invade the
uterus and remodel its spiral arteries, transforming them into large, dilated blood vessels. …

DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes

D Bannon, E Moen, M Schwartz, E Borba, T Kudo… - Nature …, 2021 - nature.com
Deep learning is transforming the analysis of biological images, but applying these models
to large datasets remains challenging. Here we describe the DeepCell Kiosk, cloud-native …

Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning

E Moen, E Borba, G Miller, M Schwartz, D Bannon… - Biorxiv, 2019 - biorxiv.org
Live-cell imaging experiments have opened an exciting window into the behavior of living
systems. While these experiments can produce rich data, the computational analysis of these …

Ecological characteristics impact PFAS concentrations in a US North Atlantic food web

ML Hedgespeth, DL Taylor, S Balint, M Schwartz… - Science of The Total …, 2023 - Elsevier
This is the first comprehensive study of per- and polyfluoroalkyl substances (PFAS) in a
coastal food web of the US North Atlantic, in which we characterize the presence and …

Scaling biological discovery at the interface of deep learning and cellular imaging

M Schwartz, U Israel, X Wang, E Laubscher, C Yu… - Nature …, 2023 - nature.com
Concurrent advances in imaging technologies and deep learning have transformed the nature
and scale of data that can now be collected with imaging. Here we discuss the progress …

Spatiotemporal coordination at the maternal-fetal interface promotes trophoblast invasion and vascular remodeling in the first half of human pregnancy

…, S Warshawsky, H Piyadasa, G Miller, M Schwartz… - Biorxiv, 2021 - biorxiv.org
Beginning in the first trimester, fetally derived extravillous trophoblasts (EVTs) invade the
uterus and remodel its spiral arteries, transforming them into large, dilated blood vessels that …

Dynamic allocation of computational resources for deep learning-enabled cellular image analysis with Kubernetes

D Bannon, E Moen, M Schwartz, E Borba, S Cui… - BioRxiv, 2018 - biorxiv.org
Deep learning is transforming the ability of life scientists to extract information from images.
These techniques have better accuracy than conventional approaches and enable …

[HTML][HTML] Tidal Flushing Rather Than Non-Point Source Nitrogen Pollution Drives Nutrient Dynamics in A Putatively Eutrophic Estuary

JR Krause, ME Gannon, AJ Oczkowski, MJ Schwartz… - Water, 2022 - mdpi.com
The effects of nonpoint source nutrients on estuaries can be difficult to pinpoint, with researchers
often using indicator species, monitoring, and models to detect influence and change. …

[HTML][HTML] A Foundation Model for Cell Segmentation

U Israel, M Marks, R Dilip, Q Li, M Schwartz, E Pradhan… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Cells are the fundamental unit of biological organization, and identifying them in imaging
data-cell segmentation-is a critical task for various cellular imaging experiments. While deep …