[HTML][HTML] Massive mining of publicly available RNA-seq data from human and mouse

…, KM Jagodnik, HJ Lee, L Wang, MC Silverstein… - Nature …, 2018 - nature.com
RNA sequencing (RNA-seq) is the leading technology for genome-wide transcript quantification.
However, publicly available RNA-seq data is currently provided mostly in raw form, a …

[PDF][PDF] The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations

…, E He, D Torre, Z Wang, AB Dohlman, MC Silverstein… - Cell systems, 2018 - cell.com
The Library of Integrated Network-Based Cellular Signatures (LINCS) is an NIH Common
Fund program that catalogs how human cells globally respond to chemical, genetic, and …

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks

…, GW Gundersen, MC Silverstein… - Nucleic acids …, 2018 - academic.oup.com
While gene expression data at the mRNA level can be globally and accurately measured,
profiling the activity of cell signaling pathways is currently much more difficult. …

[PDF][PDF] FAIRshake: toolkit to evaluate the FAIRness of research digital resources

…, MC Silverstein, BM Schilder, K Robasky, C Castillo… - Cell systems, 2019 - cell.com
As more digital resources are produced by the research community, it is becoming
increasingly important to harmonize and organize them for synergistic utilization. The findable, …

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

…, E He, K Sani, KM Jagodnik, MC Silverstein… - …, 2019 - academic.oup.com
Mechanistic molecular studies in biomedical research often discover important genes that are
aberrantly over- or under-expressed in disease. However, manipulating these genes in an …

Characterization of water in hydrated Bombyx mori silk fibroin fiber and films by 2H NMR relaxation and 13C solid state NMR

…, K Isobe, S Kametani, OT Ukpebor, MC Silverstein… - Acta biomaterialia, 2017 - Elsevier
… This study showed that 13 C solid state NMR coupled with 13 C selective labeling and peak
deconvolution analysis is a very powerful method for analyzing the local structure of SF and …

The role of mode of delivery on elastic fiber architecture and vaginal vault elasticity: a rodent model study

…, M Billah, E Raparia, A Shah, MC Silverstein… - Journal of the …, 2014 - Elsevier
We report on an experimental study of the role of mode of delivery and pregnancy on the
architecture of vaginal elastic fibers and vaginal vault elasticity in female Sprague-Dawley rats. …

[HTML][HTML] 13C, 2H NMR studies of structural and dynamical modifications of glucose-exposed porcine aortic elastin

MC Silverstein, K Bilici, SW Morgan, Y Wang… - Biophysical …, 2015 - cell.com
Elastin, the principal component of the elastic fiber of the extracellular matrix, imparts to
vertebrate tissues remarkable resilience and longevity. This work focuses on elucidating …

FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

…, MC Silverstein, BM Schilder, K Robasky, C Castillo… - BioRxiv, 2019 - biorxiv.org
As more datasets, tools, workflows, APIs, and other digital resources are produced by the
research community, it is becoming increasingly difficult to harmonize and organize these …

Mechanical, structural, and dynamical modifications of cholesterol exposed porcine aortic elastin

K Bilici, SW Morgan, MC Silverstein, Y Wang… - Biophysical …, 2016 - Elsevier
Elastin is a protein of the extracellular matrix that contributes significantly to the elasticity of
connective tissues. In this study, we examine dynamical and structural modifications of aortic …