User profiles for Mrinal Shekhar

Mrinal Shekhar

Group Leader, CADD, Senior Computational Chemist 1
Verified email at broadinstitute.org
Cited by 1153

X-ray structures define human P2X3 receptor gating cycle and antagonist action

SE Mansoor, W Lü, W Oosterheert, M Shekhar… - Nature, 2016 - nature.com
P2X receptors are trimeric, non-selective cation channels activated by ATP that have important
roles in the cardiovascular, neuronal and immune systems. Despite their central function …

[PDF][PDF] Activation and desensitization mechanism of AMPA receptor-TARP complex by cryo-EM

S Chen, Y Zhao, Y Wang, M Shekhar, E Tajkhorshid… - Cell, 2017 - cell.com
AMPA receptors mediate fast excitatory neurotransmission in the mammalian brain and
transduce the binding of presynaptically released glutamate to the opening of a transmembrane …

[HTML][HTML] Direct protein-lipid interactions shape the conformational landscape of secondary transporters

C Martens, M Shekhar, AJ Borysik, AM Lau… - Nature …, 2018 - nature.com
Secondary transporters undergo structural rearrangements to catalyze substrate translocation
across the cell membrane – yet how such conformational changes happen within a lipid …

[HTML][HTML] Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

…, LU Schäfer, MF Schmid, GF Schröder, M Shekhar… - Nature …, 2021 - nature.com
This paper describes outcomes of the 2019 Cryo-EM Model Challenge. The goals were to (1)
assess the quality of models that can be produced from cryogenic electron microscopy (…

High-resolution structures with bound Mn2+ and Cd2+ map the metal import pathway in an Nramp transporter

S Ray, SP Berry, EA Wilson, CH Zhang, M Shekhar… - Elife, 2023 - elifesciences.org
Transporters of the Nramp (Natural resistance-associated macrophage protein) family import
divalent transition metal ions into cells of most organisms. By supporting metal homeostasis…

An Iterative Approach Guides Discovery of the FabI Inhibitor Fabimycin, a Late-Stage Antibiotic Candidate with In Vivo Efficacy against Drug-Resistant Gram-Negative …

…, M Raynor, D Caridha, A Zaino, M Shekhar… - ACS Central …, 2022 - ACS Publications
Genomic studies and experiments with permeability-deficient strains have revealed a variety
of biological targets that can be engaged to kill Gram-negative bacteria. However, the …

[HTML][HTML] Retrieving functional pathways of biomolecules from single-particle snapshots

A Dashti, G Mashayekhi, M Shekhar, D Ben Hail… - Nature …, 2020 - nature.com
A primary reason for the intense interest in structural biology is the fact that knowledge of
structure can elucidate macromolecular functions in living organisms. Sustained effort has …

Cryo-EM and MD infer water-mediated proton transport and autoinhibition mechanisms of Vo complex

SH Roh, M Shekhar, G Pintilie, C Chipot, S Wilkens… - Science …, 2020 - science.org
Rotary vacuolar adenosine triphosphatases (V-ATPases) drive transmembrane proton transport
through a V o proton channel subcomplex. Despite recent high-resolution structures of …

Protein flexibility and dissociation pathway differentiation can explain onset of resistance mutations in kinases

M Shekhar, Z Smith, MA Seeliger… - Angewandte Chemie …, 2022 - Wiley Online Library
Understanding how mutations render a drug ineffective is a problem of immense relevance.
Often the mechanism through which mutations cause drug resistance can be explained …

[PDF][PDF] CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps

M Shekhar, G Terashi, C Gupta, D Sarkar… - Matter, 2021 - cell.com
Cryoelectron microscopy requires molecular modeling for refinement of structures. Ensemble
models arrive at low free-energy molecular structures, but are computationally expensive …