User profiles for Namshin Kim

Namshin Kim

Bioneer, Bioinformatics Team
Verified email at rna.kr
Cited by 4351

[HTML][HTML] A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

A Guffanti, M Iacono, P Pelucchi, N Kim, G Soldà… - BMC genomics, 2009 - Springer
Background The cancer transcriptome is difficult to explore due to the heterogeneity of
quantitative and qualitative changes in gene expression linked to the disease status. An …

[HTML][HTML] Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome …

…, JS Kim, S Baek, BS Choi, HJ Yu, DS Kim, N Kim… - Genome biology, 2009 - Springer
Background Brassica rapa is one of the most economically important vegetable crops
worldwide. Owing to its agronomic importance and phylogenetic position, B. rapa provides a …

Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals

E Larrainzar, BK Riely, SC Kim… - Plant …, 2015 - academic.oup.com
The legume-rhizobium symbiosis is initiated through the activation of the Nodulation (Nod)
factor-signaling cascade, leading to a rapid reprogramming of host cell developmental …

Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes

AV Alekseyenko, N Kim, CJ Lee - Rna, 2007 - rnajournal.cshlp.org
Association of alternative splicing (AS) with accelerated rates of exon evolution in some
organisms has recently aroused widespread interest in its role in evolution of eukaryotic gene …

Development, validation and genetic analysis of a large soybean SNP genotyping array

YG Lee, N Jeong, JH Kim, K Lee, KH Kim… - The Plant …, 2015 - Wiley Online Library
Cultivated soybean (Glycine max) suffers from a narrow germplasm relative to other crop
species, probably because of under‐use of wild soybean (Glycine soja) as a breeding resource…

Tumor suppressor miRNA-204-5p regulates growth, metastasis, and immune microenvironment remodeling in breast cancer

…, S Kim, D Kim, DH Chung, K Jeong, K Kim, KY Kim… - Cancer research, 2019 - AACR
Namshin KimNamshin Kim … Ki Yoon Kim

Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes

YM Jeong, N Kim, BO Ahn, M Oh, WH Chung… - Theoretical and applied …, 2016 - Springer
Keymessage This study presents a chromosome-scale draft genome sequence of radish
that is assembled into nine chromosomal pseudomolecules. A comprehensive comparative …

[PDF][PDF] Dynamics of HSPC repopulation in nonhuman primates revealed by a decade-long clonal-tracking study

S Kim, N Kim, AP Presson, ME Metzger, AC Bonifacino… - Cell stem cell, 2014 - cell.com
In mice, clonal tracking of hematopoietic stem cells (HSCs) has revealed variations in
repopulation characteristics. However, it is unclear whether similar properties apply in primates. …

Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes

…, JH Kim, IY Choi, HK Choi, JK Moon, N Kim… - DNA …, 2014 - academic.oup.com
Despite the importance of soybean as a major crop, genome-wide variation and evolution of
cultivated soybeans are largely unknown. Here, we catalogued genome variation in an …

ChimerDB 2.0—a knowledgebase for fusion genes updated

P Kim, S Yoon, N Kim, S Lee, M Ko, H Lee… - Nucleic acids …, 2010 - academic.oup.com
Chromosome translocations and gene fusions are frequent events in the human genome and
have been found to cause diverse types of tumor. ChimerDB is a knowledgebase of fusion …