[HTML][HTML] Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

LC Gillet, P Navarro, S Tate, H Röst, N Selevsek… - Molecular & Cellular …, 2012 - ASBMB
Most proteomic studies use liquid chromatography coupled to tandem mass spectrometry to
identify and quantify the peptides generated by the proteolysis of a biological sample. …

[HTML][HTML] Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

…, S Ohtsuki, R Schlapbach, N Selevsek… - Nature …, 2017 - nature.com
Quantitative proteomics employing mass spectrometry is an indispensable tool in life science
research. Targeted proteomics has emerged as a powerful approach for reproducible …

[HTML][HTML] DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro

…, R Nudischer, S Boerno, B Timmermann, N Selevsek… - Scientific reports, 2019 - nature.com
Though clinical trials for medical applications of dimethyl sulfoxide (DMSO) reported toxicity
in the 1960s, later, the FDA classified DMSO in the safest solvent category. DMSO became …

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

R Hüttenhain, M Soste, N Selevsek, H Röst… - Science translational …, 2012 - science.org
The rigorous testing of hypotheses on suitable sample cohorts is a major limitation in translational
research. This is particularly the case for the validation of protein biomarkers; the lack …

PASSEL: The P eptide A tlas SRM experiment library

…, R Hüttenhain, R Schiess, N Selevsek… - …, 2012 - Wiley Online Library
Public repositories for proteomics data have accelerated proteomics research by enabling
more efficient cross‐analyses of datasets, supporting the creation of protein and peptide …

[HTML][HTML] Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry

N Selevsek, CY Chang, LC Gillet, P Navarro… - Molecular & Cellular …, 2015 - ASBMB
Targeted mass spectrometry by selected reaction monitoring (S/MRM) has proven to be a
suitable technique for the consistent and reproducible quantification of proteins across multiple …

[HTML][HTML] Soil restoration with organic amendments: linking cellular functionality and ecosystem processes

F Bastida, N Selevsek, IF Torres, T Hernández… - Scientific Reports, 2015 - nature.com
A hot topic in recent decades, the application of organic amendments to arid-degraded soils
has been shown to benefit microbially-mediated processes. However, despite the …

[PDF][PDF] Glucagon-induced acetylation of Foxa2 regulates hepatic lipid metabolism

F von Meyenn, T Porstmann, E Gasser, N Selevsek… - Cell metabolism, 2013 - cell.com
Circulating levels of insulin and glucagon reflect the nutritional state of animals and elicit
regulatory responses in the liver that maintain glucose and lipid homeostasis. The transcription …

[HTML][HTML] Systematic proteomic analysis identifies β-site amyloid precursor protein cleaving enzyme 2 and 1 (BACE2 and BACE1) substrates in pancreatic β-cells

I Stützer, N Selevsek, D Esterházy, A Schmidt… - Journal of biological …, 2013 - ASBMB
Expansion of functional islet β-cell mass is a physiological process to compensate for
increased insulin demand. Deficiency or pharmacological inhibition of the plasma membrane …

[HTML][HTML] Targeted proteomics guided by label-free quantitative proteome analysis in saliva reveal transition signatures from health to periodontal disease

N Bostanci, N Selevsek, W Wolski, J Grossmann… - Molecular & Cellular …, 2018 - ASBMB
Periodontal diseases are among the most prevalent worldwide, but largely silent, chronic
diseases. They affect the tooth-supporting tissues with multiple ramifications on life quality. …