[HTML][HTML] Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
Most proteomic studies use liquid chromatography coupled to tandem mass spectrometry to
identify and quantify the peptides generated by the proteolysis of a biological sample. …
identify and quantify the peptides generated by the proteolysis of a biological sample. …
[HTML][HTML] Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
…, S Ohtsuki, R Schlapbach, N Selevsek… - Nature …, 2017 - nature.com
Quantitative proteomics employing mass spectrometry is an indispensable tool in life science
research. Targeted proteomics has emerged as a powerful approach for reproducible …
research. Targeted proteomics has emerged as a powerful approach for reproducible …
[HTML][HTML] DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro
…, R Nudischer, S Boerno, B Timmermann, N Selevsek… - Scientific reports, 2019 - nature.com
Though clinical trials for medical applications of dimethyl sulfoxide (DMSO) reported toxicity
in the 1960s, later, the FDA classified DMSO in the safest solvent category. DMSO became …
in the 1960s, later, the FDA classified DMSO in the safest solvent category. DMSO became …
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
R Hüttenhain, M Soste, N Selevsek, H Röst… - Science translational …, 2012 - science.org
The rigorous testing of hypotheses on suitable sample cohorts is a major limitation in translational
research. This is particularly the case for the validation of protein biomarkers; the lack …
research. This is particularly the case for the validation of protein biomarkers; the lack …
PASSEL: The P eptide A tlas SRM experiment library
…, R Hüttenhain, R Schiess, N Selevsek… - …, 2012 - Wiley Online Library
Public repositories for proteomics data have accelerated proteomics research by enabling
more efficient cross‐analyses of datasets, supporting the creation of protein and peptide …
more efficient cross‐analyses of datasets, supporting the creation of protein and peptide …
[HTML][HTML] Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry
Targeted mass spectrometry by selected reaction monitoring (S/MRM) has proven to be a
suitable technique for the consistent and reproducible quantification of proteins across multiple …
suitable technique for the consistent and reproducible quantification of proteins across multiple …
[HTML][HTML] Soil restoration with organic amendments: linking cellular functionality and ecosystem processes
F Bastida, N Selevsek, IF Torres, T Hernández… - Scientific Reports, 2015 - nature.com
A hot topic in recent decades, the application of organic amendments to arid-degraded soils
has been shown to benefit microbially-mediated processes. However, despite the …
has been shown to benefit microbially-mediated processes. However, despite the …
[PDF][PDF] Glucagon-induced acetylation of Foxa2 regulates hepatic lipid metabolism
F von Meyenn, T Porstmann, E Gasser, N Selevsek… - Cell metabolism, 2013 - cell.com
Circulating levels of insulin and glucagon reflect the nutritional state of animals and elicit
regulatory responses in the liver that maintain glucose and lipid homeostasis. The transcription …
regulatory responses in the liver that maintain glucose and lipid homeostasis. The transcription …
[HTML][HTML] Systematic proteomic analysis identifies β-site amyloid precursor protein cleaving enzyme 2 and 1 (BACE2 and BACE1) substrates in pancreatic β-cells
I Stützer, N Selevsek, D Esterházy, A Schmidt… - Journal of biological …, 2013 - ASBMB
Expansion of functional islet β-cell mass is a physiological process to compensate for
increased insulin demand. Deficiency or pharmacological inhibition of the plasma membrane …
increased insulin demand. Deficiency or pharmacological inhibition of the plasma membrane …
[HTML][HTML] Targeted proteomics guided by label-free quantitative proteome analysis in saliva reveal transition signatures from health to periodontal disease
Periodontal diseases are among the most prevalent worldwide, but largely silent, chronic
diseases. They affect the tooth-supporting tissues with multiple ramifications on life quality. …
diseases. They affect the tooth-supporting tissues with multiple ramifications on life quality. …