Methods included: standardizing computational reuse and portability with the common workflow language
… CRUSOE, SANNE ABELN, ALEXANDRU IOSUP, PETER AMSTUTZ, JOHN CHILTON,
NEBOJŠA TIJANIC, HERVÉ MÉNAGER, STIAN SOILAND-REYES, BOGDAN GAVRILOVIC …
NEBOJŠA TIJANIC, HERVÉ MÉNAGER, STIAN SOILAND-REYES, BOGDAN GAVRILOVIC …
Common workflow language, v1. 0
The Common Workflow Language (CWL) is an informal, multi-vendor working group
consisting of various organizations and individuals that have an interest in portability of data …
consisting of various organizations and individuals that have an interest in portability of data …
Antibody optimization enabled by artificial intelligence predictions of binding affinity and naturalness
Traditional antibody optimization approaches involve screening a small subset of the
available sequence space, often resulting in drug candidates with suboptimal binding affinity, …
available sequence space, often resulting in drug candidates with suboptimal binding affinity, …
Rabix: an open-source workflow executor supporting recomputability and interoperability of workflow descriptions
As biomedical data has become increasingly easy to generate in large quantities, the
methods used to analyze it have proliferated rapidly. Reproducible and reusable methods are …
methods used to analyze it have proliferated rapidly. Reproducible and reusable methods are …
Improved scaffold hopping in ligand-based virtual screening using neural representation learning
L Stojanovic, M Popovic, N Tijanic… - Journal of Chemical …, 2020 - ACS Publications
Deep learning has demonstrated significant potential in advancing state of the art in many
problem domains, especially those benefiting from automated feature extraction. Yet, the …
problem domains, especially those benefiting from automated feature extraction. Yet, the …
[HTML][HTML] A community-powered search of machine learning strategy space to find NMR property prediction models
The rise of machine learning (ML) has created an explosion in the potential strategies for
using data to make scientific predictions. For physical scientists wishing to apply ML strategies …
using data to make scientific predictions. For physical scientists wishing to apply ML strategies …
Large-scale uniform analysis of cancer whole genomes in multiple computing environments
The International Cancer Genome Consortium (ICGC)’s Pan-Cancer Analysis of Whole
Genomes (PCAWG) project aimed to categorize somatic and germline variations in both coding …
Genomes (PCAWG) project aimed to categorize somatic and germline variations in both coding …
Common workflow language, draft 3
…, J Randall, S Soiland-Reyes, L Stojanovic, N Tijanić - 2016 - escholarship.org
The Common Workflow Language (CWL) is an informal, multi-vendor working group
consisting of various organizations and individuals that have an interest in portability of data …
consisting of various organizations and individuals that have an interest in portability of data …
Portable workflow and tool descriptions with the CWL
P Amstutz, N Tijanić… - Bioinformatics …, 2015 - research.manchester.ac.uk
Bioinformatics workflow platforms provide provenance tracking, execution and data management,
repeatability, and an environment for data exploration and visualization. Example F/…
repeatability, and an environment for data exploration and visualization. Example F/…
Graph Theory Approaches For Optimizing Biomedical Data Analysis Using Reproducible Workflows
As biomedical data becomes increasingly easy to generate in large quantities, the methods
used to analyze it have proliferated rapidly. However, for the insights gained from these …
used to analyze it have proliferated rapidly. However, for the insights gained from these …