Beyond gene expression: the impact of protein post-translational modifications in bacteria

JA Cain, N Solis, SJ Cordwell - Journal of proteomics, 2014 - Elsevier
The post-translational modification (PTM) of proteins plays a critical role in the regulation of
a broad range of cellular processes in eukaryotes. Yet their role in governing similar systems …

Proteolytic Cleavage Mechanisms, Function, and “Omic” Approaches for a Near-Ubiquitous Posttranslational Modification

T Klein, U Eckhard, A Dufour, N Solis… - Chemical …, 2018 - ACS Publications
Proteases enzymatically hydrolyze peptide bonds in substrate proteins, resulting in a
widespread, irreversible posttranslational modification of the protein’s structure and biological …

Site-Specific Glycan-Peptide Analysis for Determination of N-Glycoproteome Heterogeneity

BL Parker, M Thaysen-Andersen, N Solis… - Journal of proteome …, 2013 - ACS Publications
A combined glycomics and glycoproteomics strategy was developed for the site-specific
analysis of N-linked glycosylation heterogeneity from a complex mammalian protein mixture. …

LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

PF Huesgen, PF Lange, LD Rogers, N Solis… - Nature …, 2015 - nature.com
To improve proteome coverage and protein C-terminal identification, we characterized the
Methanosarcina acetivorans thermophilic proteinase LysargiNase, which cleaves before …

Improved accuracy of cell surface shaving proteomics in Staphylococcus aureus using a false‐positive control

N Solis, MR Larsen, SJ Cordwell - Proteomics, 2010 - Wiley Online Library
Proteolytic treatment of intact bacterial cells is an ideal means for identifying surface‐exposed
peptide epitopes and has potential for the discovery of novel vaccine targets. Cell stability …

N-terminomics TAILS identifies host cell substrates of poliovirus and coxsackievirus B3 3C proteinases that modulate virus infection

JM Jagdeo, A Dufour, T Klein, N Solis… - Journal of …, 2018 - Am Soc Microbiol
Enteroviruses encode proteinases that are essential for processing of the translated viral
polyprotein. In addition, viral proteinases also target host proteins to manipulate cellular …

[PDF][PDF] Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CLpro substrate degradome

…, GS Butler, PM Grin, QT Cao, JP Nguyen, N Solis… - Cell reports, 2021 - cell.com
The main viral protease (3CL pro ) is indispensable for SARS-CoV-2 replication. We
delineate the human protein substrate landscape of 3CL pro by TAILS substrate-targeted N-…

[HTML][HTML] C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease

A Dufour, CL Bellac, U Eckhard, N Solis, T Klein… - Nature …, 2018 - nature.com
Controlled macrophage differentiation and activation in the initiation and resolution of
inflammation is crucial for averting progression to chronic inflammatory and autoimmune diseases. …

[HTML][HTML] Granzyme B is elevated in autoimmune blistering diseases and cleaves key anchoring proteins of the dermal-epidermal junction

V Russo, T Klein, DJ Lim, N Solis, Y Machado… - Scientific reports, 2018 - nature.com
In healthy skin, epidermis and dermis are anchored together at the dermal-epidermal junction
(DEJ), a specialized basement membrane pivotal for skin integrity and function. However, …

DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics

V Tam, P Chen, A Yee, N Solis, T Klein, M Kudelko… - Elife, 2020 - elifesciences.org
The spatiotemporal proteome of the intervertebral disc (IVD) underpins its integrity and function.
We present DIPPER, a deep and comprehensive IVD proteomic resource comprising 94 …