Predicting the effects of amino acid substitutions on protein function

PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that introduce
amino acid changes in their corresponding proteins. Because nsSNPs can affect protein …

Whole genome sequencing

PC Ng, EF Kirkness - Genetic variation: Methods and protocols, 2010 - Springer
Whole genome sequencing provides the most comprehensive collection of an individual’s
genetic variation. With the falling costs of sequencing technology, we envision paradigm shift …

Olfactory dysfunction in coronavirus disease 2019 patients: observational cohort study and systematic review

…, KH Chan, HL Li, FKC Wong, MY Ng… - Open forum …, 2020 - academic.oup.com
Background Olfactory dysfunction (OD) has been reported in coronavirus disease 2019 (COVID-19).
However, there are knowledge gaps about the severity, prevalence, etiology, and …

SIFT: Predicting amino acid changes that affect protein function

PC Ng, S Henikoff - Nucleic acids research, 2003 - academic.oup.com
Single nucleotide polymorphism (SNP) studies and random mutagenesis projects identify
amino acid substitutions in protein-coding regions. Each substitution has the potential to affect …

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

P Kumar, S Henikoff, PC Ng - Nature protocols, 2009 - nature.com
The effect of genetic mutation on phenotype is of significant interest in genetics. The type of
genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is …

Predicting deleterious amino acid substitutions

PC Ng, S Henikoff - Genome research, 2001 - genome.cshlp.org
Many missense substitutions are identified in single nucleotide polymorphism (SNP) data and
large-scale random mutagenesis projects. Each amino acid substitution potentially affects …

SIFT web server: predicting effects of amino acid substitutions on proteins

…, J Hu, S Henikoff, G Schneider, PC Ng - Nucleic acids …, 2012 - academic.oup.com
The Sorting Intolerant from Tolerant (SIFT) algorithm predicts the effect of coding variants on
protein function. It was first introduced in 2001, with a corresponding website that provides …

[HTML][HTML] The diploid genome sequence of an individual human

S Levy, G Sutton, PC Ng, L Feuk, AL Halpern… - PLoS …, 2007 - journals.plos.org
Presented here is a genome sequence of an individual human. It was produced from ∼32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …

SIFT missense predictions for genomes

R Vaser, S Adusumalli, SN Leng, M Sikic, PC Ng - Nature protocols, 2016 - nature.com
The SIFT (sorting intolerant from tolerant) algorithm helps bridge the gap between mutations
and phenotypic variations by predicting whether an amino acid substitution is deleterious. …

Accounting for human polymorphisms predicted to affect protein function

PC Ng, S Henikoff - Genome research, 2002 - genome.cshlp.org
A major interest in human genetics is to determine whether a nonsynonymous single-base
nucleotide polymorphism (nsSNP) in a gene affects its protein product and, consequently, …