Predicting the effects of amino acid substitutions on protein function
PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that introduce
amino acid changes in their corresponding proteins. Because nsSNPs can affect protein …
amino acid changes in their corresponding proteins. Because nsSNPs can affect protein …
Whole genome sequencing
PC Ng, EF Kirkness - Genetic variation: Methods and protocols, 2010 - Springer
Whole genome sequencing provides the most comprehensive collection of an individual’s
genetic variation. With the falling costs of sequencing technology, we envision paradigm shift …
genetic variation. With the falling costs of sequencing technology, we envision paradigm shift …
Olfactory dysfunction in coronavirus disease 2019 patients: observational cohort study and systematic review
Background Olfactory dysfunction (OD) has been reported in coronavirus disease 2019 (COVID-19).
However, there are knowledge gaps about the severity, prevalence, etiology, and …
However, there are knowledge gaps about the severity, prevalence, etiology, and …
SIFT: Predicting amino acid changes that affect protein function
PC Ng, S Henikoff - Nucleic acids research, 2003 - academic.oup.com
Single nucleotide polymorphism (SNP) studies and random mutagenesis projects identify
amino acid substitutions in protein-coding regions. Each substitution has the potential to affect …
amino acid substitutions in protein-coding regions. Each substitution has the potential to affect …
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
P Kumar, S Henikoff, PC Ng - Nature protocols, 2009 - nature.com
The effect of genetic mutation on phenotype is of significant interest in genetics. The type of
genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is …
genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is …
Predicting deleterious amino acid substitutions
PC Ng, S Henikoff - Genome research, 2001 - genome.cshlp.org
Many missense substitutions are identified in single nucleotide polymorphism (SNP) data and
large-scale random mutagenesis projects. Each amino acid substitution potentially affects …
large-scale random mutagenesis projects. Each amino acid substitution potentially affects …
SIFT web server: predicting effects of amino acid substitutions on proteins
The Sorting Intolerant from Tolerant (SIFT) algorithm predicts the effect of coding variants on
protein function. It was first introduced in 2001, with a corresponding website that provides …
protein function. It was first introduced in 2001, with a corresponding website that provides …
[HTML][HTML] The diploid genome sequence of an individual human
Presented here is a genome sequence of an individual human. It was produced from ∼32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …
SIFT missense predictions for genomes
The SIFT (sorting intolerant from tolerant) algorithm helps bridge the gap between mutations
and phenotypic variations by predicting whether an amino acid substitution is deleterious. …
and phenotypic variations by predicting whether an amino acid substitution is deleterious. …
Accounting for human polymorphisms predicted to affect protein function
PC Ng, S Henikoff - Genome research, 2002 - genome.cshlp.org
A major interest in human genetics is to determine whether a nonsynonymous single-base
nucleotide polymorphism (nsSNP) in a gene affects its protein product and, consequently, …
nucleotide polymorphism (nsSNP) in a gene affects its protein product and, consequently, …