Disease variants alter transcription factor levels and methylation of their binding sites

…, R Van Der Breggen, J Van Rooij, N Lakenberg… - Nature …, 2017 - nature.com
Most disease-associated genetic variants are noncoding, making it challenging to design
experiments to understand their functional consequences 1 , 2 . Identification of expression …

Genome‐wide association study identifies a single major locus contributing to survival into old age; the APOE locus revisited

…, R van der Breggen, HED Suchiman, N Lakenberg… - Aging cell, 2011 - Wiley Online Library
By studying the loci that contribute to human longevity, we aim to identify mechanisms that
contribute to healthy aging. To identify such loci, we performed a genome‐wide association …

Identification of DIO2 as a new susceptibility locus for symptomatic osteoarthritis

…, TJ Visser, AB Seymour, N Lakenberg… - Human molecular …, 2008 - academic.oup.com
Osteoarthritis [MIM 165720] is a common late-onset articular joint disease for which no
pharmaceutical intervention is available to attenuate the cartilage degeneration. To identify a new …

[HTML][HTML] Genes involved in the osteoarthritis process identified through genome wide expression analysis in articular cartilage; the RAAK study

…, N Bomer, R van der Breggen, N Lakenberg… - PloS one, 2014 - journals.plos.org
Objective Identify gene expression profiles associated with OA processes in articular cartilage
and determine pathways changing during the disease process. Methods Genome wide …

[PDF][PDF] DNA methylation analysis identifies loci for blood pressure regulation

…, R van der Breggen, J van Rooij, N Lakenberg… - The American Journal of …, 2017 - cell.com
Genome-wide association studies have identified hundreds of genetic variants associated
with blood pressure (BP), but sequence variation accounts for a small fraction of the …

Genome-wide association study (GWAS)-identified disease risk alleles do not compromise human longevity

…, R van der Breggen, N Lakenberg… - Proceedings of the …, 2010 - National Acad Sciences
A set of currently known alleles increasing the risk for coronary artery disease, cancer, and
type 2 diabetes as identified by genome-wide association studies was tested for compatibility …

RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage

…, A Mahfouz, W den Hollander, N Lakenberg… - Annals of the …, 2019 - ard.bmj.com
Objective To uncover the microRNA (miRNA) interactome of the osteoarthritis (OA)
pathophysiological process in the cartilage. Methods We performed RNA sequencing in 130 …

[PDF][PDF] Improving phenotypic prediction by combining genetic and epigenetic associations

…, R van der Breggen, J van Rooij, N Lakenberg… - The American Journal of …, 2015 - cell.com
We tested whether DNA-methylation profiles account for inter-individual variation in body
mass index (BMI) and height and whether they predict these phenotypes over and above …

Underlying molecular mechanisms of DIO2 susceptibility in symptomatic osteoarthritis

…, SD Bos, R van der Breggen, N Lakenberg… - Annals of the …, 2015 - ard.bmj.com
Objectives To investigate how the genetic susceptibility gene DIO2 confers risk to osteoarthritis
(OA) onset in humans and to explore whether counteracting the deleterious effect could …

[HTML][HTML] Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs

…, R van der Breggen, J van Rooij, N Lakenberg… - Journal of …, 2016 - Elsevier
Genome-wide association and fine-mapping studies in 14 autoimmune diseases (AID) have
implicated more than 250 loci in one or more of these diseases. As more than 90% of AID-…