User profiles for Nicolas Dierckxsens

Nicolas Dierckxsens

Postdoctoral researcher, Okinawa Institute of Science and Technology
Verified email at oist.jp
Cited by 2849

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …

COLOMBOS v3. 0: leveraging gene expression compendia for cross-species analyses

M Moretto, P Sonego, N Dierckxsens… - Nucleic acids …, 2016 - academic.oup.com
COLOMBOS is a database that integrates publicly available transcriptomics data for several
prokaryotic model organisms. Compared to the previous version it has more than doubled in …

[HTML][HTML] Multichromosomal Mitochondrial Genome of Paphiopedilum micranthum: Compact and Fragmented Genome, and Rampant Intracellular Gene Transfer

JX Yang, N Dierckxsens, MZ Bai, YY Guo - International Journal of …, 2023 - mdpi.com
Orchidaceae is one of the largest families of angiosperms. Considering the large number of
species in this family and its symbiotic relationship with fungi, Orchidaceae provide an ideal …

[HTML][HTML] Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

…, O Tšuiko, M Catteeuw, Y Zhao, N Dierckxsens… - Genome Biology, 2022 - Springer
Background During normal zygotic division, two haploid parental genomes replicate, unite
and segregate into two biparental diploid blastomeres. Results Contrary to this fundamental …

[HTML][HTML] A benchmark of structural variation detection by long reads through a realistic simulated model

N Dierckxsens, T Li, JR Vermeesch, Z Xie - Genome biology, 2021 - Springer
Accurate simulations of structural variation distributions and sequencing data are crucial for
the development and benchmarking of new tools. We develop Sim-it, a straightforward tool …

Unraveling heteroplasmy patterns with NOVOPlasty

N Dierckxsens, P Mardulyn… - NAR Genomics and …, 2020 - academic.oup.com
Heteroplasmy, the existence of multiple mitochondrial haplotypes within an individual, has
been studied across different scientific fields. Mitochondrial genome polymorphisms have …

[HTML][HTML] 22q11. 2 low copy repeats expanded in the human lineage

L Vervoort, N Dierckxsens, Z Pereboom… - Frontiers in …, 2021 - frontiersin.org
Segmental duplications or low copy repeats (LCRs) constitute duplicated regions interspersed
in the human genome, currently neglected in standard analyses due to their extreme …

Primary mediastinal large B‐cell lymphoma is characterized by large‐scale copy‐neutral loss of heterozygosity

…, L Marcelis, N Dierckxsens… - Genes …, 2022 - Wiley Online Library
Abstract Development of primary mediastinal B‐cell lymphoma (PMBL) is driven by cumulative
genomic aberrations. We discovered a unique copy‐neutral loss of heterozygosity (CN‐…

Multiple paralogues and recombination mechanisms drive the high incidence of 22q11. 2 Deletion Syndrome

L Vervoort, N Dierckxsens, M Sousa Santos… - bioRxiv, 2024 - biorxiv.org
The 22q11.2 deletion syndrome (22q11.2DS) is the most common microdeletion disorder.
Why the incidence of 22q11.2DS is much greater than that of other genomic disorders …

Parental genomes segregate into different blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

…, H Masset, O Tšuiko, M Catteeuw, N Dierckxsens… - bioRxiv, 2021 - biorxiv.org
The zygotic division enables two haploid genomes to segregate into two biparental diploid
blastomeres. This fundamental tenet was challenged by the observation that blastomeres …