Resolving the full spectrum of human genome variation using Linked-Reads
…, E Holt, CB Jabara, S Jett, N Keivanfar… - Genome …, 2019 - genome.cshlp.org
Large-scale population analyses coupled with advances in technology have demonstrated
that the human genome is more diverse than originally thought. To date, this diversity has …
that the human genome is more diverse than originally thought. To date, this diversity has …
[CITATION][C] Improved de novo Assembly of Genome Sequences
N Keivanfar - Plant and Animal Genome XXVI Conference …, 2018 - pag.confex.com
[CITATION][C] How to Determine the Genome Sequence of Single Insects
N Keivanfar, P Shah, N Weisenfeld, V Kumar… - Plant and Animal … - pag.confex.com
[BOOK][B] Realizing and Probing Driven Quantum Systems with Ultracold Gases
SV Rajagopal - 2019 - search.proquest.com
Ultracold quantum gases offer a versatile platform to study a wide range of open questions
in condensed matter physics and beyond. In particular, their controllability, isolation from …
in condensed matter physics and beyond. In particular, their controllability, isolation from …
[PDF][PDF] Dissecting the causal mechanism of X-linked dystonia-parkinsonism by integrating genome and transcriptome assembly
… We thank Daniel MacArthur for review of mutation patterns in ExAC and Nikka Keivanfar
for DNA extractions for the 10X Genomics library preparation. Funding for this study was …
for DNA extractions for the 10X Genomics library preparation. Funding for this study was …
[HTML][HTML] Nosocomial Infection Surveillance in Neonatal Intensive Care Units of Bahrami Children's Hospital
Background: Nosocomial Infection (NI) is one of the leading causes of short- and long-term
morbidity and mortality among neonates, especially in Neonatal Intensive Care Units (NICUs)…
morbidity and mortality among neonates, especially in Neonatal Intensive Care Units (NICUs)…
Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
Female Aedes aegypti mosquitoes infect hundreds of millions of people each year with
dangerous viral pathogens including dengue, yellow fever, Zika, and chikungunya. Progress in …
dangerous viral pathogens including dengue, yellow fever, Zika, and chikungunya. Progress in …
LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data
Linked-Reads technologies, popularized by 10x Genomics, combine the high-quality and low
cost of short-reads sequencing with a long-range information by adding barcodes that tag …
cost of short-reads sequencing with a long-range information by adding barcodes that tag …
High quality phasing using linked-read whole genome sequencing of patient cohorts informs genetic understanding of complex traits
S Mastromatteo, A Chen, J Gong, F Lin… - bioRxiv, 2022 - biorxiv.org
Phasing of heterozygous alleles is critical for interpretation of cis-effects of disease-relevant
variation. For population studies, phase is often inferred from external data but read-based …
variation. For population studies, phase is often inferred from external data but read-based …
[PDF][PDF] High-quality read-based phasing of cystic fibrosis cohort informs genetic understanding of disease modification
S Mastromatteo, A Chen, J Gong, F Lin… - Human Genetics and …, 2023 - cell.com
Phasing of heterozygous alleles is critical for interpretation of cis-effects of disease-relevant
variation. We sequenced 477 individuals with cystic fibrosis (CF) using linked-read …
variation. We sequenced 477 individuals with cystic fibrosis (CF) using linked-read …