Multi-omic and multi-view clustering algorithms: review and cancer benchmark
N Rappoport, R Shamir - Nucleic acids research, 2018 - academic.oup.com
Recent high throughput experimental methods have been used to collect large biomedical
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
NEMO: cancer subtyping by integration of partial multi-omic data
N Rappoport, R Shamir - Bioinformatics, 2019 - academic.oup.com
Motivation Cancer subtypes were usually defined based on molecular characterization of
single omic data. Increasingly, measurements of multiple omic profiles for the same cohort are …
single omic data. Increasingly, measurements of multiple omic profiles for the same cohort are …
[HTML][HTML] Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape
N Rappoport, E Chomsky, T Nagano, C Seibert… - Nature …, 2023 - nature.com
Embryonic development involves massive proliferation and differentiation of cell lineages.
This must be supported by chromosome replication and epigenetic reprogramming, but how …
This must be supported by chromosome replication and epigenetic reprogramming, but how …
[PDF][PDF] Spontaneous changes in ploidy are common in yeast
Changes in ploidy are relatively rare, but play important roles in the development of cancer
and the acquisition of long-term adaptations. Genome duplications occur across the tree of …
and the acquisition of long-term adaptations. Genome duplications occur across the tree of …
Inaccuracy of the log‐rank approximation in cancer data analysis
N Rappoport, R Shamir - Molecular systems biology, 2019 - embopress.org
Comparing survival patterns between groups of individuals is ubiquitous in biomedical
research. A significant difference in survival can show the efficacy of a drug or the biological …
research. A significant difference in survival can show the efficacy of a drug or the biological …
Integration of gene expression and DNA methylation data across different experiments
Y Itai, N Rappoport, R Shamir - Nucleic Acids Research, 2023 - academic.oup.com
Integrative analysis of multi-omic datasets has proven to be extremely valuable in cancer
research and precision medicine. However, obtaining multimodal data from the same samples …
research and precision medicine. However, obtaining multimodal data from the same samples …
[HTML][HTML] MONET: Multi-omic module discovery by omic selection
N Rappoport, R Safra, R Shamir - PLoS computational biology, 2020 - journals.plos.org
Recent advances in experimental biology allow creation of datasets where several genome-wide
data types (called omics) are measured per sample. Integrative analysis of multi-omic …
data types (called omics) are measured per sample. Integrative analysis of multi-omic …
Natural and age-related variation in circulating human hematopoietic stem cells
N Furer, N Rappoport, A Lifshitz, A bercovich… - bioRxiv, 2023 - biorxiv.org
Hematopoietic stem and progenitor cells (HSPCs) are intended to deliver life-long, consistent
output. However, with age, we observe changes in blood counts and clonal disorders. …
output. However, with age, we observe changes in blood counts and clonal disorders. …
S103: NATURAL AND AGE-RELATED VARIATION IN CIRCULATING HUMAN HEMATOPOIETIC STEM CELLS
Background: Interrogation of complete blood counts from large cohorts of age-diverse healthy
individuals exposes large inter-individual heterogeneity across all age decimals, as well …
individuals exposes large inter-individual heterogeneity across all age decimals, as well …
Single-cell analysis of CD34-enriched blood cells reveals early prognostic markers of myelodysplastic syndromes
E Meiri, N Saar-Furer, N Rappoport, S Pollock… - Cancer Research, 2023 - AACR
Myelodysplastic Syndromes (MDS) are a group of blood malignancies characterized by
aberrant differentiation of hematopoietic stem and progenitor cells (HSPC) in the bone marrow …
aberrant differentiation of hematopoietic stem and progenitor cells (HSPC) in the bone marrow …