User profiles for Nita Parekh

Nita Parekh

Associate Professor of Bioinformatics, IIIT, Hyderabad
Verified email at iiit.ac.in
Cited by 1002

NAPS: network analysis of protein structures

B Chakrabarty, N Parekh - Nucleic acids research, 2016 - academic.oup.com
Traditionally, protein structures have been analysed by the secondary structure architecture
and fold arrangement. An alternative approach that has shown promise is modelling …

Global and local control of spatiotemporal chaos in coupled map lattices

N Parekh, S Parthasarathy, S Sinha - Physical Review Letters, 1998 - APS
We present a simple method, using constant pinnings, to suppress spatiotemporal chaos
and achieve global control in coupled map lattice models under different situations, eg, for …

[HTML][HTML] Identification of binding sites on protein targeting to glycogen for enzymes of glycogen metabolism

NM Fong, TC Jensen, AS Shah, NN Parekh… - Journal of Biological …, 2000 - ASBMB
The activation of protein phosphastase-1 (PP1) by insulin plays a critical role in the regulation
of glycogen metabolism. PTG is a PP1 glycogen-targeting protein, which also binds the …

[HTML][HTML] iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization

P Dharanipragada, S Vogeti, N Parekh - PLoS One, 2018 - journals.plos.org
Discovery of copy number variations (CNVs), a major category of structural variations, have
dramatically changed our understanding of differences between individuals and provide an …

NAPS update: network analysis of molecular dynamics data and protein–nucleic acid complexes

…, K Garg, Y Agarwal, N Parekh - Nucleic Acids …, 2019 - academic.oup.com
Network theory is now a method of choice to gain insights in understanding protein structure,
folding and function. In combination with molecular dynamics (MD) simulations, it is an …

[HTML][HTML] Identifying tandem Ankyrin repeats in protein structures

B Chakrabarty, N Parekh - BMC bioinformatics, 2014 - Springer
Background Tandem repetition of structural motifs in proteins is frequently observed across
all forms of life. Topology of repeating unit and its frequency of occurrence are associated to …

[HTML][HTML] Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach

S Sircar, N Parekh - Frontiers in genetics, 2015 - frontiersin.org
Drought is one of the major environmental stress conditions affecting the yield of rice across
the globe. Unraveling the functional roles of the drought-responsive genes and their …

[HTML][HTML] Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach

S Sircar, N Parekh - PloS one, 2019 - journals.plos.org
Background Drought is a severe environmental stress. It is estimated that about 50% of the
world rice production is affected mainly by drought. Apart from conventional breeding …

PRIGSA: protein repeat identification by graph spectral analysis

B Chakrabarty, N Parekh - Journal of bioinformatics and …, 2014 - World Scientific
Repetition of a structural motif within protein is associated with a wide range of structural and
functional roles. In most cases the repeating units are well conserved at the structural level …

Non-algebraic domain growth in random magnets: a cell dynamical approach

S Puri, D Chowdhury, N Parekh - Journal of Physics A …, 1991 - iopscience.iop.org
The authors develop a novel numerical approach, based on a computationally efficient cell
dynamical system (CDS) model, for studying the kinetics of ordering in systems (described by …