User profiles for Nuno Fonseca
Nuno A FonsecaBIOPOLIS-CIBIO/InBIO, University of Porto, Portugal Verified email at cibio.up.pt Cited by 11264 |
Two independent modes of chromatin organization revealed by cohesin removal
Imaging and chromosome conformation capture studies have revealed several layers of
chromosome organization, including segregation into megabase-sized active and inactive …
chromosome organization, including segregation into megabase-sized active and inactive …
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
…, M Keays, YA Tang, NA Fonseca… - Nucleic acids …, 2016 - academic.oup.com
Expression Atlas ( http://www.ebi.ac.uk/gxa ) provides information about gene and protein
expression in animal and plant samples of different cell types, organism parts, developmental …
expression in animal and plant samples of different cell types, organism parts, developmental …
Assemblathon 1: a competitive assessment of de novo short read assembly methods
Low-cost short read sequencing technology has revolutionized genomics, though it is only
just becoming practical for the high-quality de novo assembly of a novel large genome. We …
just becoming practical for the high-quality de novo assembly of a novel large genome. We …
ArrayExpress update–from bulk to single-cell expression data
ArrayExpress ( https://www.ebi.ac.uk/arrayexpress ) is an archive of functional genomics data
from a variety of technologies assaying functional modalities of a genome, such as gene …
from a variety of technologies assaying functional modalities of a genome, such as gene …
[HTML][HTML] Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
The discovery of drivers of cancer has traditionally focused on protein-coding genes 1 , 2 , 3
– 4 . Here we present analyses of driver point mutations and structural variants in non-…
– 4 . Here we present analyses of driver point mutations and structural variants in non-…
Expression Atlas update: from tissues to single cells
…, N George, S Fexova, NA Fonseca… - Nucleic acids …, 2020 - academic.oup.com
Expression Atlas is EMBL-EBI’s resource for gene and protein expression. It sources and
compiles data on the abundance and localisation of RNA and proteins in various biological …
compiles data on the abundance and localisation of RNA and proteins in various biological …
[HTML][HTML] Genomic basis for RNA alterations in cancer
… 3 4 5 6 7 Demircioğlu Deniz 8 9 Fonseca Nuno A. 2 He … - Nature, 2020 - nature.com
Transcript alterations often result from somatic changes in cancer genomes 1 . Various forms
of RNA alterations have been described in cancer, including overexpression 2 , altered …
of RNA alterations have been described in cancer, including overexpression 2 , altered …
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays… - Nucleic acids …, 2018 - academic.oup.com
Expression Atlas ( http://www.ebi.ac.uk/gxa ) is an added value database that provides
information about gene and protein expression in different species and contexts, such as tissue, …
information about gene and protein expression in different species and contexts, such as tissue, …
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
…, T Burdett, B Fiorelli, NA Fonseca… - Nucleic acids …, 2014 - academic.oup.com
Expression Atlas (http://www. ebi. ac. uk/gxa) is a value-added database providing information
about gene, protein and splice variant expression in different cell types, organism parts, …
about gene, protein and splice variant expression in different cell types, organism parts, …