Non-model organisms, a species endangered by proteogenomics

J Armengaud, J Trapp, O Pible, O Geffard… - Journal of …, 2014 - Elsevier
Previously, large-scale proteomics was possible only for organisms whose genomes were
sequenced, meaning the most common model organisms. The use of next-generation …

Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window

…, JP Lavigne, A Sotto, L Grenga, O Pible… - Journal of Proteome …, 2020 - ACS Publications
Rapid but yet sensitive, specific, and high-throughput detection of the severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) in clinical samples is key to diagnose infected …

Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria

EM Hartmann, F Allain, JC Gaillard, O Pible… - … : methods and protocols, 2014 - Springer
Currently, proteomic tools are able to establish a complete list of the most abundant proteins
present in a sample, providing the opportunity to study at high resolution the physiology of …

[HTML][HTML] Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

…, B Mesuere, G Miotello, SL Peters, O Pible… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in microbial
communities. While many metaproteomic workflows are available, the impact of method …

[HTML][HTML] Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment

D Gouveia, C Almunia, Y Cogne, O Pible… - Journal of …, 2019 - Elsevier
Anthropogenic pollutants are found worldwide. Their fate and effects on human and
ecosystem health must be appropriately monitored. Today, ecotoxicology is focused on the …

Shortlisting SARS‐CoV‐2 peptides for targeted studies from experimental data‐dependent acquisition tandem mass spectrometry data

…, JC Gaillard, F Gallais, L Bellanger, O Pible… - …, 2020 - Wiley Online Library
Detection of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) is a crucial
tool for fighting the COVID‐19 pandemic. This dataset brief presents the exploration of a …

Structural Consequences of Binding of UO22+ to Apotransferrin:  Can This Protein Account for Entry of Uranium into Human Cells?

…, C Torne-Celer, S Plantevin, O Pible… - Biochemistry, 2007 - ACS Publications
It has been established that transferrin binds a variety of metals. These include toxic uranyl
ions which form rather stable uranyl-transferrin derivatives. We determined the extent to …

Taxonomical and functional changes in COVID‐19 faecal microbiome could be related to SARS‐CoV‐2 faecal load

L Grenga, O Pible, G Miotello, K Culotta… - Environmental …, 2022 - Wiley Online Library
Since the beginning of the pandemic caused by the severe acute respiratory syndrome
coronavirus 2 (SARS‐CoV‐2) the gastrointestinal (GI) tract has emerged as an important organ …

[HTML][HTML] Evaluation of sample preparation methods for fast proteotyping of microorganisms by tandem mass spectrometry

K Hayoun, D Gouveia, L Grenga, O Pible… - Frontiers in …, 2019 - frontiersin.org
Tandem mass spectrometry-based proteotyping allows characterizing microorganisms in
terms of taxonomy and is becoming an important tool for investigating microbial diversity from …

[HTML][HTML] Taxonomical composition and functional analysis of biofilms sampled from a nuclear storage pool

O Pible, P Petit, G Steinmetz, C Rivasseau… - Frontiers in …, 2023 - frontiersin.org
Sampling small amounts of biofilm from harsh environments such as the biofilm present on
the walls of a radioactive material storage pool offers few analytical options if taxonomic …