User profiles for Omer Donmez

Omer Donmez

Fen Fakültesi, Istanbul Universitesi
Verified email at istanbul.edu.tr
Cited by 366

[HTML][HTML] Global discovery of lupus genetic risk variant allelic enhancer activity

X Lu, X Chen, C Forney, O Donmez, D Miller… - Nature …, 2021 - nature.com
Genome-wide association studies of Systemic Lupus Erythematosus (SLE) nominate 3073
genetic variants at 91 risk loci. To systematically screen these variants for allelic …

[HTML][HTML] Bismuth-induced effects on optical, lattice vibrational, and structural properties of bulk GaAsBi alloys

F Sarcan, Ö Dönmez, K Kara, A Erol, E Akalın… - Nanoscale Research …, 2014 - Springer
Bulk GaAs 1 - x Bi x /GaAs alloys with various bismuth compositions are studied using power-
and temperature-dependent photoluminescence (PL), Raman scattering, and atomic force …

Epstein–Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci

T Hong, S Parameswaran, OA Donmez… - Genome …, 2021 - genome.cshlp.org
The interplay between environmental and genetic factors plays a key role in the
development of many autoimmune diseases. In particular, the Epstein–Barr virus (EBV) is an …

[HTML][HTML] Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets

…, S Parameswaran, M Pujato, O Donmez… - PLoS …, 2021 - journals.plos.org
Runt-related transcription factor 1 (Runx1) can act as both an activator and a repressor. Here
we show that CRISPR-mediated deletion of Runx1 in mouse metanephric mesenchyme-…

[HTML][HTML] maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

…, AT Bejjani, JA Wayman, O Donmez… - PLOS Computational …, 2023 - journals.plos.org
Transcription factors read the genome, fundamentally connecting DNA sequence to gene
expression across diverse cell types. Determining how, where, and when TFs bind chromatin …

[PDF][PDF] Effector memory T cells induce innate inflammation by triggering DNA damage and a non-canonical STING pathway in dendritic cells

…, CN Vallez, K Kawarizadeh, I Saha, O Donmez… - Cell reports, 2023 - cell.com
Cognate interaction between CD4 + effector memory T (T EM ) cells and dendritic cells (DCs)
induces innate inflammatory cytokine production, resulting in detrimental autoimmune …

[HTML][HTML] Magnetotransport study on as-grown and annealed n-and p-type modulation-doped GaInNAs/GaAs strained quantum well structures

Ö Dönmez, F Sarcan, A Erol, M Gunes… - Nanoscale research …, 2014 - Springer
We report the observation of thermal annealing- and nitrogen-induced effects on electronic
transport properties of as-grown and annealed n- and p-type modulation-doped Ga 1 - x In x …

Anisotropic electron factor as a probe of the electronic structure of epilayers

…, H Makhloufi, A Arnoult, C Fontaine, O Donmez… - Physical Review B, 2014 - APS
The electron Landé g factor (g*) is investigated both experimentally and theoretically in a
series of GaBi x As 1− x/GaAs strained epitaxial layers, for bismuth compositions up to x= 3.8%. …

Characterization of a GaAs/GaAsBi pin solar cell

…, OG Erbas, B Kinaci, O Donmez… - Semiconductor …, 2019 - iopscience.iop.org
The structural and photovoltaic properties of the GaAs/GaAsBi pin solar cell with GaAs 0.983
Bi 0.017 active layer are investigated by optical and electrical measurement techniques. …

[PDF][PDF] Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis

…, K Ernst, M Granitto, C Forney, OA Donmez… - The American Journal of …, 2024 - cell.com
Eosinophilic esophagitis (EoE) is a rare atopic disorder associated with esophageal
dysfunction, including difficulty swallowing, food impaction, and inflammation, that develops in a …