User profiles for Otto Jolanki
Otto JolankiSoftware Developer, Stanford University Verified email at stanford.edu Cited by 2494 |
The Encyclopedia of DNA elements (ENCODE): data portal update
…, TR Dreszer, JS Strattan, O Jolanki… - Nucleic acids …, 2018 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center has developed the
ENCODE Portal database and website as the source for the data and metadata generated …
ENCODE Portal database and website as the source for the data and metadata generated …
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
…, SR Miyasato, JS Strattan, O Jolanki… - Nucleic acids …, 2020 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project
aimed at identifying all the functional elements in the human and mouse genomes. Data …
aimed at identifying all the functional elements in the human and mouse genomes. Data …
[HTML][HTML] Narcolepsy risk loci outline role of T cell autoimmunity and infectious triggers in narcolepsy
Narcolepsy type 1 (NT1) is caused by a loss of hypocretin/orexin transmission. Risk factors
include pandemic 2009 H1N1 influenza A infection and immunization with Pandemrix®. Here…
include pandemic 2009 H1N1 influenza A infection and immunization with Pandemrix®. Here…
[PDF][PDF] HLA-DPB1 and HLA class I confer risk of and protection from narcolepsy
…, H Hong, C Coquillard, J Mahlios, O Jolanki… - The American Journal of …, 2015 - cell.com
Type 1 narcolepsy, a disorder caused by a lack of hypocretin (orexin), is so strongly
associated with human leukocyte antigen (HLA) class II HLA-DQA1 ∗ 01:02-DQB1 ∗ 06:02 (DQ0602…
associated with human leukocyte antigen (HLA) class II HLA-DQA1 ∗ 01:02-DQB1 ∗ 06:02 (DQ0602…
[HTML][HTML] Annotating and prioritizing human non-coding variants with RegulomeDB v. 2
Nearly 90% of the disease risk-associated variants identified by genome-wide association
studies are in non-coding regions of the genome. The annotations obtained by analyzing …
studies are in non-coding regions of the genome. The annotations obtained by analyzing …
[HTML][HTML] The ENCODE uniform analysis pipelines
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a
comprehensive catalog of functional elements in the human genome. The current database …
comprehensive catalog of functional elements in the human genome. The current database …
[PDF][PDF] Data sanitization to reduce private information leakage from functional genomics
The generation of functional genomics datasets is surging, because they provide insight into
gene regulation and organismal phenotypes (eg, genes upregulated in cancer). The intent …
gene regulation and organismal phenotypes (eg, genes upregulated in cancer). The intent …
The ENCODE portal as an epigenomics resource
…, S R. Miyasato, JS Strattan, O Jolanki… - Current protocols in …, 2019 - Wiley Online Library
The Encyclopedia of DNA Elements (ENCODE) web portal hosts genomic data generated by
the ENCODE Consortium, Genomics of Gene Regulation, The NIH Roadmap Epigenomics …
the ENCODE Consortium, Genomics of Gene Regulation, The NIH Roadmap Epigenomics …
Data navigation on the ENCODE portal
Spanning two decades, the Encyclopaedia of DNA Elements (ENCODE) is a collaborative
research project that aims to identify all the functional elements in the human and mouse …
research project that aims to identify all the functional elements in the human and mouse …
[HTML][HTML] The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity
The majority of mammalian genes encode multiple transcript isoforms that result from differential
promoter use, changes in exonic splicing, and alternative 3’end choice. Detecting and …
promoter use, changes in exonic splicing, and alternative 3’end choice. Detecting and …