User profiles for P. J. Schaap
PJ SchaapAssociate professor, Systems and Synthetic Biology, Wageningen University, The … Verified email at wur.nl Cited by 8858 |
[HTML][HTML] Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
The filamentous fungus Aspergillus niger is widely exploited by the fermentation industry for
the production of enzymes and organic acids, particularly citric acid. We sequenced the 33.9-…
the production of enzymes and organic acids, particularly citric acid. We sequenced the 33.9-…
[HTML][HTML] A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
…, M Visser, VT Sedano-Núñez, PJ Schaap… - … et Biophysica Acta (BBA …, 2014 - Elsevier
In sulfate-reducing and methanogenic environments complex biopolymers are hydrolyzed
and degraded by fermentative micro-organisms that produce hydrogen, carbon dioxide and …
and degraded by fermentative micro-organisms that produce hydrogen, carbon dioxide and …
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
MR Andersen, MP Salazar, PJ Schaap… - Genome …, 2011 - genome.cshlp.org
The filamentous fungus Aspergillus niger exhibits great diversity in its phenotype. It is found
globally, both as marine and terrestrial strains, produces both organic acids and hydrolytic …
globally, both as marine and terrestrial strains, produces both organic acids and hydrolytic …
MEMOTE for standardized genome-scale metabolic model testing
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …
[PDF][PDF] RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
CRISPR-Cas is a prokaryotic adaptive immune system that provides sequence-specific
defense against foreign nucleic acids. Here we report the structure and function of the effector …
defense against foreign nucleic acids. Here we report the structure and function of the effector …
Green genes: bioinformatics and systems-biology innovations drive algal biotechnology
Many species of microalgae produce hydrocarbons, polysaccharides, and other valuable
products in significant amounts. However, large-scale production of algal products is not yet …
products in significant amounts. However, large-scale production of algal products is not yet …
[PDF][PDF] Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
The CRISPR-Cas system is a prokaryotic host defense system against genetic elements. The
Type III-B CRISPR-Cas system of the bacterium Thermus thermophilus, the TtCmr complex…
Type III-B CRISPR-Cas system of the bacterium Thermus thermophilus, the TtCmr complex…
Designing eukaryotic gene expression regulation using machine learning
…, ADJ van Dijk, MK Julsing, PJ Schaap… - Trends in …, 2020 - cell.com
Controlling the expression of genes is one of the key challenges of synthetic biology. Until
recently fine-tuned control has been out of reach, particularly in eukaryotes owing to their …
recently fine-tuned control has been out of reach, particularly in eukaryotes owing to their …
[HTML][HTML] NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
Background: Massive high-throughput sequencing of short, hypervariable segments of the
16S ribosomal RNA (rRNA) gene has transformed the methodological landscape describing …
16S ribosomal RNA (rRNA) gene has transformed the methodological landscape describing …
3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities
…, VAP Martins dos Santos, PJ Schaap - Proteins: Structure …, 2010 - Wiley Online Library
Ten years of experience with molecular class–specific information systems (MCSIS) such as
with the hand‐curated G protein–coupled receptor database (GPCRDB) or the …
with the hand‐curated G protein–coupled receptor database (GPCRDB) or the …