User profiles for P. Bankhead

Peter Bankhead

University of Edinburgh
Verified email at ed.ac.uk
Cited by 8825

Digital pathology and image analysis in tissue biomarker research

PW Hamilton, P Bankhead, Y Wang, R Hutchinson… - Methods, 2014 - Elsevier
Digital pathology and the adoption of image analysis have grown rapidly in the last few years.
This is largely due to the implementation of whole slide scanning, advances in software …

[HTML][HTML] QuPath: Open source software for digital pathology image analysis

P Bankhead, MB Loughrey, JA Fernández… - Scientific reports, 2017 - nature.com
… and reproducible assessment, and a median cutoff for analysis, we found lower disease-specific
survival among patients with a high tumor stromal percentage in unadjusted analysis (p

Developing image analysis methods for digital pathology

P Bankhead - The Journal of Pathology, 2022 - Wiley Online Library
The potential to use quantitative image analysis and artificial intelligence is one of the
driving forces behind digital pathology. However, despite novel image analysis methods for …

[HTML][HTML] Fast retinal vessel detection and measurement using wavelets and edge location refinement

P Bankhead, CN Scholfield, JG McGeown, TM Curtis - PloS one, 2012 - journals.plos.org
The relationship between changes in retinal vessel morphology and the onset and progression
of diseases such as diabetes, hypertension and retinopathy of prematurity (ROP) has …

Pan-cancer image-based detection of clinically actionable genetic alterations

…, J Krause, JM Niehues, KAJ Sommer, P Bankhead… - Nature cancer, 2020 - nature.com
… all P values across all cancer types. All P values smaller than 10 –5 after FDR correction
are reported as 10 −5 . Statistical methods are further described in Extended Data Fig. 10a–c. …

Regulatory T cells promote myelin regeneration in the central nervous system

…, M Dittmer, R Penalva, SR Mayoral, P Bankhead… - Nature …, 2017 - nature.com
… 1k; P = 0.2857 at day 10 and P = 0.1273 at day 14), emphasizing the predominant effect of
T reg -depletion on the differentiation phase of the regenerative response. To our knowledge, …

[HTML][HTML] A biologist's guide to planning and performing quantitative bioimaging experiments

…, V Uhlmann, J Kirk, KA Gonzales, P Bankhead… - PLoS …, 2023 - journals.plos.org
Technological advancements in biology and microscopy have empowered a transition from
bioimaging as an observational method to a quantitative one. However, as biologists are …

Common limitations of image processing metrics: A picture story

…, M Antonelli, T Arbel, S Bakas, P Bankhead… - arXiv preprint arXiv …, 2021 - arxiv.org
While the importance of automatic image analysis is continuously increasing, recent meta-research
revealed major flaws with respect to algorithm validation. Performance metrics are …

Topography of cancer-associated immune cells in human solid tumors

…, P Charoentong, CA Weis, D Hirsch, P Bankhead… - Elife, 2018 - elifesciences.org
… Bold HR indicates statistically significant findings with p<0.05. Bivariate analysis of both
antigens is essential for risk stratification as CD8 and CD163 phenotypes show non-trivial …

[PDF][PDF] Dynamic oscillation of translation and stress granule formation mark the cellular response to virus infection

…, S Hofmann, JP Bergeest, J Mazur, P Bankhead… - Cell host & …, 2012 - cell.com
… siRNAs leading to an efficient knockdown (Z-score > 2) and a significant change of HCV
replication (p value < 0.05) are highlighted with blue boxes. These genes were excluded from …