The UniProt knowledgebase is a public database for protein sequence and function, covering
the tree of life and over 220 million protein entries. Now, the whole community can use a …

… In defining the levels of consistency, we used the GO term specificity (P) metric computed …
The P = 1.0 means a GO term has no descendants (the most specific) and P = 0.0 means the …

Motivation: Redundant protein sequences in biological databases hinder sequence similarity
searches and make interpretation of search results difficult. Clustering of protein sequence …

To provide a detailed analysis of the molecular components and underlying mechanisms
associated with ovarian cancer, we performed a comprehensive mass-spectrometry-based …

To explore the biology of lung adenocarcinoma (LUAD) and identify new therapeutic
opportunities, we performed comprehensive proteogenomic characterization of 110 tumors and …

… (E) Cox regression signed p value for phosphosite and N-linked glycosylation site
abundance association with survival compared to the protein association to survival. …

We performed the first proteogenomic study on a prospectively collected colon cancer cohort.
Comparative proteomic and phosphoproteomic analysis of paired tumor and normal …

Background The UniProt consortium was formed in 2002 by groups from the Swiss Institute
of Bioinformatics (SIB), the European Bioinformatics Institute (EBI) and the Protein …

Lung squamous cell carcinoma (LSCC) remains a leading cause of cancer death with few
therapeutic options. We characterized the proteogenomic landscape of LSCC, providing a …

… The neomycin phosphotransferase ll (NPTll) gene provides kanamycin resistance in plants
and is under the control of the nopaline synthase promoter (NOS-P). Arrows indicate the …