[HTML][HTML] Review of force fields and intermolecular potentials used in atomistic computational materials research
… The pairwise only case ( χ = 1 ): ϕ L J r i j is the LJ pair potential up to a radius r s p l beyond
which a cubic spline is used to smoothly turn off the potential at radius r m a x ( r s p l and r …
which a cubic spline is used to smoothly turn off the potential at radius r m a x ( r s p l and r …
Remembering foods and foes: emerging principles of transcriptional memory
SSH Tehrani, A Kogan, P Mikulski… - Cell Death & …, 2023 - nature.com
Transcriptional memory is characterized by a primed cellular state, induced by an external
stimulus that results in an altered expression of primed genes upon re-exposure to the …
stimulus that results in an altered expression of primed genes upon re-exposure to the …
Epigenetic mechanisms of abiotic stress response and memory in plants
Being sessile organisms, plants are exposed to multiple stimuli without possibility for escape.
Therefore, plants have evolved to be able to adapt their developmental and physiological …
Therefore, plants have evolved to be able to adapt their developmental and physiological …
Compression of Carbon Nanotubes Filled with , , or Ne: Predictions from Molecular Dynamics Simulations
The effect of filling nanotubes with C 60, CH 4, or Ne on the mechanical properties of the
nanotubes is examined. The approach is classical molecular dynamics using the reactive …
nanotubes is examined. The approach is classical molecular dynamics using the reactive …
Molecular-scale tribology of amorphous carbon coatings: effects of film thickness, adhesion, and long-range interactions
GT Gao, PT Mikulski, JA Harrison - Journal of the American …, 2002 - ACS Publications
Classical molecular dynamics simulations have been conducted to investigate the atomic-scale
friction and wear when hydrogen-terminated diamond (111) counterfaces are in sliding …
friction and wear when hydrogen-terminated diamond (111) counterfaces are in sliding …
[HTML][HTML] In vivo single-molecule analysis reveals COOLAIR RNA structural diversity
… The positional base-pair probability was derived by \({P}_{i}=\mathop{\sum }\limits_{j}^{J}{P}_{ij}\),
where P ij is the probability of base i of being base-paired with base j, over all its …
where P ij is the probability of base i of being base-paired with base j, over all its …
The effects of film structure and surface hydrogen on the properties of amorphous carbon films
GT Gao, PT Mikulski, GM Chateauneuf… - The Journal of …, 2003 - ACS Publications
Molecular dynamics simulations were used to examine the mechanical and tribological
properties of amorphous-carbon thin films with and without surface hydrogen. The simulations …
properties of amorphous-carbon thin films with and without surface hydrogen. The simulations …
Packing-Density Effects on the Friction of n-Alkane Monolayers
PT Mikulski, JA Harrison - Journal of the American Chemical …, 2001 - ACS Publications
… The histograms have been scaled to a differential probability p(l) which gives the probability
p(l)dl that a bond chosen at random deviates from its average by an amount within l to l + dl. …
p(l)dl that a bond chosen at random deviates from its average by an amount within l to l + dl. …
STAT1 is required to establish but not maintain interferon‐γ‐induced transcriptional memory
Exposure of human cells to interferon‐γ (IFNγ) results in a mitotically heritable yet reversible
state called long‐term transcriptional memory. We previously identified the clustered GBP …
state called long‐term transcriptional memory. We previously identified the clustered GBP …
Hybrid protein assembly-histone modification mechanism for PRC2-based epigenetic switching and memory
The histone modification H3K27me3 plays a central role in Polycomb-mediated epigenetic
silencing. H3K27me3 recruits and allosterically activates Polycomb Repressive Complex 2 (…
silencing. H3K27me3 recruits and allosterically activates Polycomb Repressive Complex 2 (…