The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements.
…, EH Peters, R Peterson, KL Philips, PS Pine… - Nature …, 2006 - europepmc.org
Over the last decade, the introduction of microarray technology has had a profound impact
on gene expression research. The publication of studies with dissimilar or altogether …
on gene expression research. The publication of studies with dissimilar or altogether …
The determination of stem cell fate by 3D scaffold structures through the control of cell shape
G Kumar, CK Tison, K Chatterjee, PS Pine… - Biomaterials, 2011 - Elsevier
Stem cell response to a library of scaffolds with varied 3D structures was investigated.
Microarray screening revealed that each type of scaffold structure induced a unique gene …
Microarray screening revealed that each type of scaffold structure induced a unique gene …
Using RNA sample titrations to assess microarray platform performance and normalization techniques
…, WD Jones, PK Wolber, CD Johnson, PS Pine… - Nature …, 2006 - nature.com
We have assessed the utility of RNA titration samples for evaluating microarray platform
performance and the impact of different normalization methods on the results obtained. As part …
performance and the impact of different normalization methods on the results obtained. As part …
[HTML][HTML] Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
There is a critical need for standard approaches to assess, report and compare the technical
performance of genome-scale differential gene expression experiments. Here we assess …
performance of genome-scale differential gene expression experiments. Here we assess …
[HTML][HTML] Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
KL Thompson, PS Pine, BA Rosenzweig, Y Turpaz… - BMC …, 2007 - Springer
Background The interpretability of microarray data can be affected by sample quality. To
systematically explore how RNA quality affects microarray assay performance, a set of rat liver …
systematically explore how RNA quality affects microarray assay performance, a set of rat liver …
[HTML][HTML] Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design
PS Pine, SA Munro, JR Parsons, J McDaniel… - BMC …, 2016 - Springer
Background Highly multiplexed assays for quantitation of RNA transcripts are being used in
many areas of biology and medicine. Using data generated by these transcriptomic assays …
many areas of biology and medicine. Using data generated by these transcriptomic assays …
Identification of platform-independent gene expression markers of cisplatin nephrotoxicity.
…, M Mirsky, JM Naciff, V Oreffo, PS Pine… - Environmental …, 2004 - ehp.niehs.nih.gov
Within the International Life Sciences Institute Committee on Genomics, a working group was
formed to focus on the application of microarray technology to preclinical assessments of …
formed to focus on the application of microarray technology to preclinical assessments of …
The effect of ion channel blockers, immunosuppressive agents, and other drugs on the activity of the multi‐drug transporter
JL Weaver, PS Pine, A Aszalos… - … journal of cancer, 1993 - Wiley Online Library
The MDRI protein is an energy‐dependent transport protein responsible for the multi‐drug
resistance seen in many tumors. A variety of drugs have been shown to inhibit the function of …
resistance seen in many tumors. A variety of drugs have been shown to inhibit the function of …
Ontology analysis of global gene expression differences of human bone marrow stromal cells cultured on 3D scaffolds or 2D films
BA Baker, PS Pine, K Chatterjee, G Kumar, NJ Lin… - Biomaterials, 2014 - Elsevier
Differences in gene expression of human bone marrow stromal cells (hBMSCs) during
culture in three-dimensional (3D) nanofiber scaffolds or on two-dimensional (2D) films were …
culture in three-dimensional (3D) nanofiber scaffolds or on two-dimensional (2D) films were …
[PDF][PDF] Epitope mapping by photobleaching fluorescence resonance energy transfer measurements using a laser scanning microscope system
G Szabà, PS Pine, JL Weaver, M Kasari, A Aszalos - Biophysical journal, 1992 - cell.com
… More importantly, however, the actual illumination time upon bleaching in our case was 2,000
x 68 p,s = 136 ms (collection of the 2,000 points took more than 40 s because of the 20-ms …
x 68 p,s = 136 ms (collection of the 2,000 points took more than 40 s because of the 20-ms …