User profiles for P. Whetzel

Patricia L. Whetzel

Assistant Research Professor, University of Colorado
Verified email at tislab.org
Cited by 12307

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

…, RH Scheuermann, N Shah, PL Whetzel… - Nature …, 2007 - nature.com
The value of any kind of data is greatly enhanced when it exists in a form that allows it to be
integrated with other data. One approach to integration is through the annotation of multiple …

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

…, D Suveges, O Vrousgou, PL Whetzel… - Nucleic acids …, 2019 - academic.oup.com
… Full P-value SS are defined as the aggregate P-values and association data for every … user
queries; for example, retrieving P-values and associated fields, P-value plus the effect allele …

The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource

…, R Stefancsik, J Stewart, P Whetzel… - Nucleic acids …, 2023 - academic.oup.com
… At the time of our previous publication (10), there were no full P value summary statistics
from aggregate analyses openly shared to our knowledge. We now accept submissions of these…

BioPortal: ontologies and integrated data resources at the click of a mouse

NF Noy, NH Shah, PL Whetzel, B Dai… - Nucleic acids …, 2009 - academic.oup.com
Biomedical ontologies provide essential domain knowledge to drive data integration, information
retrieval, data annotation, natural-language processing and decision support. BioPortal …

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

PL Whetzel, NF Noy, NH Shah… - Nucleic acids …, 2011 - academic.oup.com
The National Center for Biomedical Ontology (NCBO) is one of the National Centers for
Biomedical Computing funded under the NIH Roadmap Initiative. Contributing to the national …

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

…, J Schug, CJ Stoeckert Jr, P Whetzel - Nucleic acids …, 2003 - academic.oup.com
PlasmoDB ( http://PlasmoDB.org ) is the official database of the Plasmodium falciparum
genome sequencing consortium. This resource incorporates the recently completed P. …

[HTML][HTML] The ontology for biomedical investigations

…, CF Taylor, C Torniai, JA Turner, R Vita, PL Whetzel… - PloS one, 2016 - journals.plos.org
… Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, et al. The minimum information
… Maguire E, González-Beltrán A, Whetzel PL, Sansone SA, Rocca-Serra P. OntoMaton: a …

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

…, CF Taylor, PL Whetzel, JA White, P Spellman… - Nature …, 2007 - nature.com
The Functional Genomics Experiment data model (FuGE) has been developed to facilitate
convergence of data standards for high-throughput, comprehensive analyses in biology. …

[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

…, I Uchiyama, M Umezaki, R Vos, PL Whetzel… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …

[HTML][HTML] A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

…, G Sherlock, CJ Stoeckert, J White, PL Whetzel… - BMC …, 2006 - Springer
… The RNA extraction and labeling are described in the Material processing protocol, P-XMPL-1.
Raw data files (Data1.cel, Data2.cel and Data3.cel) are obtained, and then normalized …